Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_N24
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 82 6e-17
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.15
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.2
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 5.5
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 5.5
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 7.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 9.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 9.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.6
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 81.8 bits (193), Expect = 6e-17
Identities = 49/136 (36%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMS-SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F+K +L GGG S + D V FLDAYA E WE +LH+MVG+ + +
Sbjct: 97 FRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKETWETILHFMVGTPEAKFPG 156
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
+ +L GLM+ ITRAGFQFLL Q+W L YL +E + +
Sbjct: 157 EGVLSLLKRGGLMS--GPKNQLRITRAGFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQ 214
Query: 177 CLAFLYQLSFSSPGEA 130
L FL+ L G A
Sbjct: 215 VLHFLFMLGSLDLGRA 230
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 68 DFITPTTREHQANRTLFKNINQ 3
D+ITPT EH +TL INQ
Sbjct: 250 DYITPTPEEHAVRKTLVSRINQ 271
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Frame = -2
Query: 274 LPVSAPEYTQAGVAVPAALPAHGRAPQPQRRRVPGXXXXXXXXXPWGSRGRRPHCYTDTR 95
LP SAP +PAA P AP P P + R + R
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGRANLMASIR 508
Query: 94 TRGN---VPAEQTSLRPRLASTK 35
G + + + S P +ASTK
Sbjct: 509 ASGGMDLLKSRKVSASPSVASTK 531
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +2
Query: 287 MTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFPSG 466
+T P+S+ +S S TAS+ + + + T+ S+ + S+ + + T+ + S
Sbjct: 1087 VTGSPTSSVTAVSSTSSVEGTASSTIAAAASAATL--SSDAASGSSTVTSSATASSSSSA 1144
Query: 467 SSDDDMLHALPPPSND 514
++ D PSND
Sbjct: 1145 ATTADSSVTTDTPSND 1160
Score = 25.8 bits (54), Expect = 4.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 296 DPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFPSGSSD 475
DPS+A+ + SS+ TAS S ++ T + S S A AS +S + + +S
Sbjct: 963 DPSTAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASV 1022
Query: 476 DD 481
D
Sbjct: 1023 TD 1024
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -3
Query: 531 KKNLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQ 373
K++ +S + S+SSSL PD A+ + L + AL W C ++ ++G+ Q
Sbjct: 361 KRSFSMSEIVTSMQMSISSSLSPDQCAKAIELL-SKALPAW-CTIN-LLGNIQ 410
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 407 SQRSSAYASRNDTSRAFPSGSSDDD 481
+ RSS+Y+ R D+ R+ S + DDD
Sbjct: 255 ADRSSSYSRRGDSYRSNRSRAHDDD 279
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 271 PVSAPEYTQAGVAVPAALPAHGRAPQPQRRRV 176
P S+P T A ++ P + RAPQ +R +
Sbjct: 214 PSSSPSTTNVSNASTSSAPINPRAPQTRRESI 245
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 7.3
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 281 RVMTADPSSAS---LVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSR 451
RV D +SA + P+ + + P+ A + S+++SA +S TS
Sbjct: 470 RVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSA 529
Query: 452 AFPSGSSDDDMLHALPPPSNDTL 520
A P G A P S DT+
Sbjct: 530 AVPGGKKSAIEAAAPIPTSADTV 552
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +2
Query: 323 SPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFPSGSSDDDMLHALPP 502
+P +++ S A P + +T + S Y ++ S + S S H PP
Sbjct: 4 NPNAGIQPLTNSISQSASAHPELYHTTSHESVSTYQLQSQLSHSATSNLSTAANFHTRPP 63
Query: 503 PSND 514
+ND
Sbjct: 64 IAND 67
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.6
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Frame = +2
Query: 245 LGVLRSRNWKPARVMTADPSSASLVMSPACSSMRTASALM----PSVCALPTM*CSTHSQ 412
LG L+S PSS +P + SAL PS+ ++ S +
Sbjct: 19 LGSLKSTPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAV 78
Query: 413 RSSAYAS-RNDTSRAFPSGSSDDDMLHALPPPSNDTLR 523
SS+ S ++ + P SS + A+PPPSN+ R
Sbjct: 79 ASSSNVSLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSR 116
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 404 HSQRSSAYASRNDTSRAFPSGSSDDDMLHAL 496
HS R+S+YA+ N+ + P S + L A+
Sbjct: 59 HSDRASSYANANNVNSTQPQLVSSEQALLAI 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,118
Number of Sequences: 5004
Number of extensions: 30747
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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