Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_N24
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1609 + 34760576-34760688,34760781-34760948,34761566-347616... 56 2e-08
07_03_0682 + 20667365-20667655 32 0.26
10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753 31 0.79
10_07_0138 + 13325418-13325954 30 1.4
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 29 2.4
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 28 4.2
04_03_0017 - 9429006-9429190,9429991-9430029,9430246-9430312,943... 28 4.2
03_06_0416 - 33780911-33781861 28 5.6
03_05_0319 - 23064997-23065443 28 5.6
03_05_0317 - 23056409-23056855 28 5.6
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847... 28 5.6
12_02_0204 - 15502331-15502459,15502875-15503129 27 7.4
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608... 27 7.4
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 27 9.8
08_01_0927 - 9123473-9123589,9124534-9124616,9125177-9125252,912... 27 9.8
07_01_0978 + 8262778-8262859,8262931-8263505 27 9.8
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109... 27 9.8
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35... 27 9.8
01_03_0051 - 11985456-11985803 27 9.8
>04_04_1609 +
34760576-34760688,34760781-34760948,34761566-34761634,
34762125-34762247,34762296-34762501,34762723-34762729,
34762961-34763006,34763092-34763151,34763249-34763317,
34763790-34763873,34764178-34764263,34764859-34764949,
34765029-34765109,34765191-34765265,34765392-34765526
Length = 470
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -3
Query: 303 DGSAV-ITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAECLAFLYQLSFSSPGEA 130
DG A +T GFQFLL+ T Q+W ++ Y+ +AE R + E ++FL +LSF + GEA
Sbjct: 230 DGEAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGEA 288
>07_03_0682 + 20667365-20667655
Length = 96
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 503 GEAGRGACRRRWSRTGRPGTCRS 435
G + R RRW R GRPG CRS
Sbjct: 38 GGSRRRRTERRWGRDGRPGRCRS 60
>10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753
Length = 434
Score = 30.7 bits (66), Expect = 0.79
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +2
Query: 254 LRSRNWKPARVMTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYAS 433
LR W+ R D +A+ +P ++ TA A+ + S S + S
Sbjct: 76 LRGGFWR--RREEEDEEAAAAAAAPPATASSTAPAVASCCSSSSDSETSESSNSTGGRKS 133
Query: 434 RNDTSRAFPSGSSDDDMLHALPPPS 508
R+ + + S +S DD LHA PS
Sbjct: 134 RSHSDYSEISSASSDDSLHAAGEPS 158
>10_07_0138 + 13325418-13325954
Length = 178
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 491 RGACRRRWSRTGRPGTC-RSWTRTRWSAGSA 402
R C RRW R+ R C R W R W++G A
Sbjct: 98 RSRCSRRWRRSWRRRRCSRRWRRL-WTSGDA 127
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 521 SKCHCLGEAGRGACRRRWSRTGRPGTCRSWTRTRWSAGSA 402
+KC G AG G+ +R+G G CRSW W A +A
Sbjct: 35 AKCGGSGSAGGGSGPVA-ARSG--GACRSWQEAAWEAATA 71
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 352 VGADALGLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ 510
+G+D L H Q L A+Q ++ Q +H LP+ +++ P+P Q
Sbjct: 138 LGSDNLHPPPQHQQQQQHLDAMQDLQHQHQHQQQLPMSYNQQQLPPQPPQQPQ 190
>04_03_0017 -
9429006-9429190,9429991-9430029,9430246-9430312,
9430397-9430465,9430842-9430988
Length = 168
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 208 RVQVVLQEQPHLLGCTQEQKLEAGASDDGGPVFCVSGHESGVQQYADGVGADALGLRAAH 387
+++ + +EQ ++ Q+ + E AS+ GPV V ++++ D GAD L A +
Sbjct: 12 QLKALAEEQQAVVKGLQKVEQELAASESDGPVSEV--FRKTLKEFTDASGADVRSLSALY 69
Query: 388 HVVQHALPAL 417
V + AL
Sbjct: 70 AEVGKSADAL 79
>03_06_0416 - 33780911-33781861
Length = 316
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 274 LPVSAPEYTQAGVAVPAA--LPAHGRAPQPQRRRVP 173
L V+ P T A+PA+ P GRAP P R P
Sbjct: 28 LAVAPPSPTTPQCAIPASPHTPGRGRAPPPATPRAP 63
>03_05_0319 - 23064997-23065443
Length = 148
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 491 RGACRRRWSRTGRPGTCRSWTRTRWSAGSAC 399
R A RRRW + R G C S T + WS C
Sbjct: 11 RMAGRRRWLKRRRSGAC-SRTLSAWSRSRRC 40
>03_05_0317 - 23056409-23056855
Length = 148
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 491 RGACRRRWSRTGRPGTCRSWTRTRWSAGSAC 399
R A RRRW + R G C S T + WS C
Sbjct: 11 RMAGRRRWLKRRRSGAC-SRTLSAWSRSRRC 40
>02_04_0228 -
21083917-21084067,21084489-21084577,21084662-21084731,
21084747-21084823,21084954-21085337,21085420-21085760,
21085869-21085950,21086033-21086391,21087084-21087204,
21087427-21087512,21088896-21088944,21089262-21089275,
21089467-21089545
Length = 633
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 476 DDMLHALPPPSNDTLRFFLND 538
+D++H PP S +TL+ F+ D
Sbjct: 187 EDLIHRRPPVSRNTLKIFIRD 207
>12_02_0204 - 15502331-15502459,15502875-15503129
Length = 127
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 307 CVSGHESGVQQYADGVGADALGLRAAHHVVQHALPALQRVRVQERHVPGLP 459
C GH S AD GADALG A + A +R R R + P
Sbjct: 4 CAGGHSSASVADADADGADALGRALASLRRRRARRCCRRARQGPRLLARTP 54
>02_05_0828 +
32057670-32057851,32060054-32060132,32060808-32060869,
32060993-32061092,32061169-32061210,32062057-32062098,
32062189-32062343,32063609-32063636
Length = 229
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 372 TEGISADAVRILLHAG-LMTRDAEDGSAVITRAG 274
TEG S+++V LH+G ++D +DGS V + G
Sbjct: 188 TEGQSSESVMTALHSGSSQSQDNDDGSDVSLKLG 221
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 256 QEQKLEAGASDDGGPVFC------VSGHESGVQQYADGVGADALGLRA 381
Q Q+L AGA+ G C +SG++SG + +G D G+RA
Sbjct: 44 QRQQLRAGAAGSGKARGCRSGNEELSGNQSGGLRLGNGSDDDVCGMRA 91
>08_01_0927 -
9123473-9123589,9124534-9124616,9125177-9125252,
9125641-9125740,9125996-9126064,9126122-9126207,
9126293-9126430,9126688-9126810,9128130-9129719,
9129929-9130402
Length = 951
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 373 LRAAHHVVQHALPALQRVRVQERHVPG 453
LRA HH H LP+L + VPG
Sbjct: 198 LRAGHHPTPHTLPSLLKSLALSPAVPG 224
>07_01_0978 + 8262778-8262859,8262931-8263505
Length = 218
Score = 27.1 bits (57), Expect = 9.8
Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +1
Query: 238 HLLGCTQEQKLEAGASDDGGPVFCVSGHESGVQQYADGVGADAL-GLRAAHHVVQHALPA 414
H +G Q + AG G V + + A VG AL G AA V H L
Sbjct: 14 HKVGLEQPEAAVAGEGPLAGHGV-VHAYVGAALRPAPPVGVPALEGHEAA--VACHGLVF 70
Query: 415 LQRVRVQERHVPGLPVRLQRRRHAPR 492
LQ VR RH V QRRR R
Sbjct: 71 LQDVRCDARHEGRQAVLHQRRRGGRR 96
>03_01_0138 -
1089063-1089266,1089590-1089671,1089937-1090390,
1091094-1091634
Length = 426
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 271 PVSAPEYTQAGVAVPAALPAHGRAPQPQR 185
P+++ E ++ G + A+ P R P PQR
Sbjct: 218 PIASQEPSRTGTPIIASSPTSSRTPTPQR 246
>03_01_0039 -
348800-348912,349201-349279,349513-349687,350126-350232,
350294-350374,350783-351082,351178-351230,351357-351494,
351767-351917,352602-352809,352881-352939
Length = 487
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 398 STHSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLND 538
S S A AS + F S DD++L LP P+ D RF L+D
Sbjct: 50 SQQSFSQGASASLLHSQSQFSQVSLDDNLLTLLPSPTRDQ-RFGLHD 95
>01_03_0051 - 11985456-11985803
Length = 115
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 491 RGACRRRWSRTGRPGTCRSWTRTRWSAGSAC 399
R A RRRW + R G C S + WS C
Sbjct: 11 RMAGRRRWLKRRRTGAC-SRASSAWSRSGGC 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,896
Number of Sequences: 37544
Number of extensions: 273811
Number of successful extensions: 1443
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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