Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_N24
(545 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFII... 140 2e-33
BT007321-1|AAP35985.1| 462|Homo sapiens general transcription f... 140 2e-33
BC016302-1|AAH16302.1| 462|Homo sapiens general transcription f... 140 2e-33
BC004935-1|AAH04935.1| 462|Homo sapiens general transcription f... 140 2e-33
BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor I... 140 2e-33
AY124590-1|AAM64222.1| 462|Homo sapiens general transcription f... 140 2e-33
AL773541-3|CAI18452.1| 462|Homo sapiens general transcription f... 140 2e-33
AL669830-2|CAI18003.1| 462|Homo sapiens general transcription f... 140 2e-33
AL662854-11|CAI17435.1| 462|Homo sapiens general transcription ... 140 2e-33
AK222607-1|BAD96327.1| 462|Homo sapiens general transcription f... 140 2e-33
AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant ... 140 2e-33
AB202101-1|BAE78622.1| 462|Homo sapiens general transcription f... 140 2e-33
AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein. 140 2e-33
AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II... 140 2e-33
BC128608-1|AAI28609.1| 441|Homo sapiens reticulon 4 receptor-li... 33 0.86
AY250219-1|AAP82836.1| 441|Homo sapiens nogo receptor-like 2 pr... 33 0.86
AF532859-1|AAP21836.1| 441|Homo sapiens Nogo-66 receptor homolo... 33 0.86
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 31 2.6
BC114213-1|AAI14214.1| 1392|Homo sapiens CAP-GLY domain containi... 31 3.5
AK126408-1|BAC86543.1| 131|Homo sapiens protein ( Homo sapiens ... 30 4.6
AL590989-2|CAH70606.1| 1438|Homo sapiens patched domain containi... 30 6.1
AL031735-1|CAI22474.1| 1438|Homo sapiens patched domain containi... 30 6.1
AB037758-1|BAA92575.1| 1438|Homo sapiens KIAA1337 protein protein. 30 6.1
X52541-1|CAA36777.1| 543|Homo sapiens protein ( Human mRNA for ... 29 8.0
M62829-1|AAA35815.1| 543|Homo sapiens ETR103 protein. 29 8.0
BC073983-1|AAH73983.1| 543|Homo sapiens early growth response 1... 29 8.0
AJ243425-1|CAB46678.1| 543|Homo sapiens early growth response p... 29 8.0
>Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFIIH
protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>BT007321-1|AAP35985.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>BC016302-1|AAH16302.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>BC004935-1|AAH04935.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor II H
protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AY124590-1|AAM64222.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4 (52kD subunit) protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AL773541-3|CAI18452.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AL669830-2|CAI18003.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AL662854-11|CAI17435.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AK222607-1|BAD96327.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa variant protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant
protein.
Length = 1653
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 161 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 219
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 220 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 279
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 280 ILSFLFQLSFSTLGK 294
>AB202101-1|BAE78622.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II H
protein.
Length = 462
Score = 140 bits (340), Expect = 2e-33
Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = -3
Query: 534 FKKNLKVSLLGGGRAWSMSSS-LEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGIS 358
F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS +S
Sbjct: 114 FRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA-AVS 172
Query: 357 ADAVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAE 178
D ++L AGLM IT AGFQFLLL TP Q+W F+ YL TA+ R + E
Sbjct: 173 QDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 232
Query: 177 CLAFLYQLSFSSPGE 133
L+FL+QLSFS+ G+
Sbjct: 233 ILSFLFQLSFSTLGK 247
>BC128608-1|AAI28609.1| 441|Homo sapiens reticulon 4 receptor-like
1 protein.
Length = 441
Score = 32.7 bits (71), Expect = 0.86
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 370 GLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPK 507
G + H + H L R +E H P P R + H PRP K
Sbjct: 306 GPASPHQIKSHTLTTTDRAARKEHHSPHGPTRSKGHPHGPRPGHRK 351
>AY250219-1|AAP82836.1| 441|Homo sapiens nogo receptor-like 2
protein.
Length = 441
Score = 32.7 bits (71), Expect = 0.86
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 370 GLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPK 507
G + H + H L R +E H P P R + H PRP K
Sbjct: 306 GPASPHQIKSHTLTTTDRAARKEHHSPHGPTRSKGHPHGPRPGHRK 351
>AF532859-1|AAP21836.1| 441|Homo sapiens Nogo-66 receptor homolog-2
protein.
Length = 441
Score = 32.7 bits (71), Expect = 0.86
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 370 GLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPK 507
G + H + H L R +E H P P R + H PRP K
Sbjct: 306 GPASPHQIKSHTLTTTDRAARKEHHSPHGPTRSKGHPHGPRPGHRK 351
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 290 TADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFPSGS 469
++ PSS+S SP+ SS ++S+ S + + S+ S SS+ +S +S + PS S
Sbjct: 80 SSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSS 139
Query: 470 S 472
S
Sbjct: 140 S 140
>BC114213-1|AAI14214.1| 1392|Homo sapiens CAP-GLY domain containing
linker protein 1 protein.
Length = 1392
Score = 30.7 bits (66), Expect = 3.5
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 281 RVMTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASR 436
RVM +SASL SP+ SS+ + S++ PSV + P+ ++ SS YA +
Sbjct: 298 RVMAT--TSASLKRSPSASSLSSMSSVAPSVSSRPSR-TGLLTETSSRYARK 346
>AK126408-1|BAC86543.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ44444 fis, clone UTERU2020491. ).
Length = 131
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 503 GEAGRGACRRRWSRTGRPGTCRSWTRTRWSAGS 405
G GR C R GRP C W R RW+ GS
Sbjct: 62 GRGGRPLCAGP-GRGGRPSEC--WARLRWAVGS 91
>AL590989-2|CAH70606.1| 1438|Homo sapiens patched domain containing
2 protein.
Length = 1438
Score = 29.9 bits (64), Expect = 6.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 497 AGRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 396
AG C R W RP W+ W+ + CC
Sbjct: 86 AGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCC 119
>AL031735-1|CAI22474.1| 1438|Homo sapiens patched domain containing
2 protein.
Length = 1438
Score = 29.9 bits (64), Expect = 6.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 497 AGRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 396
AG C R W RP W+ W+ + CC
Sbjct: 86 AGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCC 119
>AB037758-1|BAA92575.1| 1438|Homo sapiens KIAA1337 protein protein.
Length = 1438
Score = 29.9 bits (64), Expect = 6.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 497 AGRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 396
AG C R W RP W+ W+ + CC
Sbjct: 86 AGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCC 119
>X52541-1|CAA36777.1| 543|Homo sapiens protein ( Human mRNA for
early growth response protein 1 (hEGR1). ).
Length = 543
Score = 29.5 bits (63), Expect = 8.0
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 287 MTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRN------DTS 448
MT P+S+S SPA SS +AS P CA+P+ S + + + N S
Sbjct: 164 MTNPPASSSSAPSPAASS-ASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNTDIFPEPQS 222
Query: 449 RAFPSGSSDDDMLHALPPPS 508
+AFP GS+ + + PPP+
Sbjct: 223 QAFP-GSAGTALQY--PPPA 239
>M62829-1|AAA35815.1| 543|Homo sapiens ETR103 protein.
Length = 543
Score = 29.5 bits (63), Expect = 8.0
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 287 MTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRN------DTS 448
MT P+S+S SPA SS +AS P CA+P+ S + + + N S
Sbjct: 164 MTNPPASSSSAPSPAASS-ASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNTDIFPEPQS 222
Query: 449 RAFPSGSSDDDMLHALPPPS 508
+AFP GS+ + + PPP+
Sbjct: 223 QAFP-GSAGTALQY--PPPA 239
>BC073983-1|AAH73983.1| 543|Homo sapiens early growth response 1
protein.
Length = 543
Score = 29.5 bits (63), Expect = 8.0
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 287 MTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRN------DTS 448
MT P+S+S SPA SS +AS P CA+P+ S + + + N S
Sbjct: 164 MTNPPASSSSAPSPAASS-ASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNTDIFPEPQS 222
Query: 449 RAFPSGSSDDDMLHALPPPS 508
+AFP GS+ + + PPP+
Sbjct: 223 QAFP-GSAGTALQY--PPPA 239
>AJ243425-1|CAB46678.1| 543|Homo sapiens early growth response
protein 1 protein.
Length = 543
Score = 29.5 bits (63), Expect = 8.0
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 287 MTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRN------DTS 448
MT P+S+S SPA SS +AS P CA+P+ S + + + N S
Sbjct: 164 MTNPPASSSSAPSPAASS-ASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNTDIFPEPQS 222
Query: 449 RAFPSGSSDDDMLHALPPPS 508
+AFP GS+ + + PPP+
Sbjct: 223 QAFP-GSAGTALQY--PPPA 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,482,031
Number of Sequences: 237096
Number of extensions: 1382597
Number of successful extensions: 5979
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5941
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -