Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N24
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    56   2e-08
Z81512-6|CAB04171.3|  455|Caenorhabditis elegans Hypothetical pr...    31   0.41 
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        31   0.72 
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    31   0.72 
AC024747-3|AAK85498.2|  318|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024696-11|AAK84510.1|  401|Caenorhabditis elegans Hypothetical...    29   2.2  
Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    28   3.8  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   5.0  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    28   5.0  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   6.7  
AL132948-39|CAI79178.1|  380|Caenorhabditis elegans Hypothetical...    27   6.7  
AL132948-38|CAD31811.1|  378|Caenorhabditis elegans Hypothetical...    27   6.7  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
 Frame = -3

Query: 498 GRAWSMSSSLEPDGKARDVSFLDAYALERWECVLHYMV--GSAQTEGISADAVRILLHAG 325
           G A   S  LEP+   R    ++  A+ERW+C+L Y+       T+ +S +  R L    
Sbjct: 120 GAAQISSLVLEPNEGNRRGKDVEKKAVERWDCILRYLALPSEENTQAVS-ETTRNLFKKA 178

Query: 324 LMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAECLAFLYQL 154
             T    D    IT  GFQFLLLS  KQ+W ++  YL     +     E +  L Q+
Sbjct: 179 NFTSGG-DTQIEITTFGFQFLLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQI 234


>Z81512-6|CAB04171.3|  455|Caenorhabditis elegans Hypothetical
           protein F25C8.2 protein.
          Length = 455

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 289 DGGPVFCVSGHESGVQQYADGVGADALGLRAAHHVVQH 402
           D  PV C +G  +    Y   VGA   GLR A  + +H
Sbjct: 414 DNNPVICFAGEHTDSTMYQTTVGAVRSGLREASRISEH 451


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 401  THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPP 505
            TH+  S+    +   + +F S   +DD ++ALPPP
Sbjct: 1046 THADNSALQLQQEQPTSSFSSWFPEDDPIYALPPP 1080


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
            protein Y47D3A.6a protein.
          Length = 1109

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 401  THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPP 505
            TH+  S+    +   + +F S   +DD ++ALPPP
Sbjct: 1045 THADNSALQLQQEQPTSSFSSWFPEDDPIYALPPP 1079


>AC024747-3|AAK85498.2|  318|Caenorhabditis elegans Hypothetical
           protein Y110A2AM.1 protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +1

Query: 208 RVQVVLQEQPHLLGC-TQEQKLEAGASDDGGPVFCVSGHESGVQQYADGVGADALG--LR 378
           R ++V + + H      ++ +LEA A+ D    F     E+  ++ ADG     LG  LR
Sbjct: 131 RERIVQEARAHARRADARDARLEAAAAADRRERFLQEAQEADARRAADGDARAELGEQLR 190

Query: 379 AAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPA 498
           A    V   LP  Q  ++++R       RL+ RR A   A
Sbjct: 191 ALEAAVA-GLPEAQAPQLRDRRA-RFVARLRARRAADAQA 228


>Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical
           protein C34E11.1 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +2

Query: 407 SQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPS 508
           S RSS  A+ N  S+  PS S  DD + A+PPPS
Sbjct: 266 SSRSSQPAATNK-SKPNPSKSFFDDPIPAIPPPS 298


>AC024696-11|AAK84510.1|  401|Caenorhabditis elegans Hypothetical
           protein F07B7.14 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 217 PAHGRAPQPQRRRVPGXXXXXXXXXPWGSRGRRPHCYTDTRTRGNVPAEQTSLRPRLAST 38
           PA  R P+P+    P           W +  RRP   + ++ + N P E+ S   RLAS 
Sbjct: 49  PASCRRPEPRSSSQPKENLPEENISTWPASCRRPEPRSSSQPKENPPKEKIS--TRLASC 106

Query: 37  KQ 32
           ++
Sbjct: 107 RR 108


>Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical
           protein F55C5.6 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 298 PVFCVSGHESGVQQYADGVGADALGLRAAHHVVQH 402
           P+ C +G  +  + Y   VGA   GLR A  +  +
Sbjct: 399 PIICFAGEHTDSKMYQTAVGASRSGLREADRIFNY 433


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +2

Query: 275 PARVMTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRA 454
           P  + +   SSA+   +PA  +   A A   S  +  T   S+ S    +    +  S A
Sbjct: 21  PTDIQSTSSSSAAPASAPAPRAGAGAGATSSSAASSSTSTPSSSSHHKKSSPPHHQKSAA 80

Query: 455 FPSGSSDDDMLHALPPPSN 511
             +   D    HA PPP++
Sbjct: 81  PSAPPRDVTSAHAPPPPAS 99


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 287 MTADPSS--ASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFP 460
           M +D +S  A+ V +  C+S    +A     CA     CS  S  SS+ ++ + +S +  
Sbjct: 1   MCSDSASNCANWVANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSST 60

Query: 461 SGSSDDD 481
           + +S DD
Sbjct: 61  AATSSDD 67


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -2

Query: 271 PVSAPEYT-QAGVAVPAALPAHGRAPQPQRRRVPGXXXXXXXXXPWGSRGRRPHC 110
           P  AP +  QAG ++P A    G A  P +   PG           GS G   HC
Sbjct: 288 PSGAPGHPGQAGSSLPGAPGPQGDAGAPGQPGAPGQQGEPGEDGESGSEGACDHC 342


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 494  GRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 396
            G  + R    +T   GTC  W  T WSA S  C
Sbjct: 1224 GTASDRPASHQTCNLGTCPFWRNTDWSACSVSC 1256


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 494  GRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 396
            G  + R    +T   GTC  W  T WSA S  C
Sbjct: 1224 GTASDRPASHQTCNLGTCPFWRNTDWSACSVSC 1256


>AL132948-39|CAI79178.1|  380|Caenorhabditis elegans Hypothetical
           protein Y39B6A.12b protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 245 LGVLRSRNWKPARVMTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQ 412
           L +L +    P    TA  SSA+    PA +S   ASA   +  A P M    ++Q
Sbjct: 264 LSILSAIRRPPLPSSTATSSSAAAPQIPAMTSSAVASATSAAAAATPMMPAKYNAQ 319


>AL132948-38|CAD31811.1|  378|Caenorhabditis elegans Hypothetical
           protein Y39B6A.12a protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 245 LGVLRSRNWKPARVMTADPSSASLVMSPACSSMRTASALMPSVCALPTM*CSTHSQ 412
           L +L +    P    TA  SSA+    PA +S   ASA   +  A P M    ++Q
Sbjct: 262 LSILSAIRRPPLPSSTATSSSAAAPQIPAMTSSAVASATSAAAAATPMMPAKYNAQ 317


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 262 APEYTQAGVAVPAALPAHGRAPQPQRRRVP 173
           AP+  Q+    P    +H R+P P+RRR P
Sbjct: 335 APKRRQSPQRRPEVKRSHQRSPSPRRRRSP 364


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 262 APEYTQAGVAVPAALPAHGRAPQPQRRRVP 173
           AP+  Q+    P    +H R+P P+RRR P
Sbjct: 335 APKRRQSPQRRPEVKRSHQRSPSPRRRRSP 364


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 262 APEYTQAGVAVPAALPAHGRAPQPQRRRVP 173
           AP+  Q+    P    +H R+P P+RRR P
Sbjct: 266 APKRRQSPQRRPEVKRSHQRSPSPRRRRSP 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,105
Number of Sequences: 27780
Number of extensions: 187535
Number of successful extensions: 816
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)