Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_N16
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 260 1e-70
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 259 3e-70
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 219 3e-58
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.40
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.69
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.69
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.8
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.9
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 4.9
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 26 6.4
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 26 6.4
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 260 bits (637), Expect = 1e-70
Identities = 120/221 (54%), Positives = 159/221 (71%), Gaps = 1/221 (0%)
Frame = -2
Query: 681 PESVXKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 502
PES+ K + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 501 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 322
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 321 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 142
+ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195
Query: 141 FTVGEKFKYASNFLWPFKLNNPTGGWR-KKTXHDVDGGDFG 22
+TVG FK A+NFLWPFKL++P GGWR +K H ++GGD G
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAG 236
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 259 bits (635), Expect = 3e-70
Identities = 122/228 (53%), Positives = 163/228 (71%), Gaps = 1/228 (0%)
Frame = -2
Query: 702 SKKLPAVPESVXKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 523
SK+ PES+ K R+ +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 522 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 343
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 342 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 163
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189
Query: 162 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTXHDVDGGDFG 22
EDLIHEI+TVG FK A+NF+WPF+L++P GGWR +K H ++GGD G
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAG 237
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 219 bits (535), Expect = 3e-58
Identities = 104/221 (47%), Positives = 145/221 (65%), Gaps = 1/221 (0%)
Frame = -2
Query: 681 PESVXKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 502
PE + K R++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 501 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 322
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 321 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 142
I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194
Query: 141 FTVGEKFKYASNFLWPFKLNNPTGG-WRKKTXHDVDGGDFG 22
+ VG FK + FLWPF L KK H +G G
Sbjct: 195 YNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAG 235
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 288 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 112
N KSV + G L+G +I I+ + ++ R+ VE +L H++ + K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201
Query: 111 SNFLWPFK 88
S F PF+
Sbjct: 202 SGFFGPFR 209
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 59 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 193
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.69
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -2
Query: 600 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 484
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 501 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 382
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 115 VLELFSNSEDLMDEVLNTDNVVFVEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 294
+L +F+ +D M L T+N + +L +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 295 S 297
S
Sbjct: 377 S 377
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 567 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 466
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 19 GSKVSAVDIMXGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLN 165
G K+ A+ I+ L VQ + E+ ++ LF NSED+M + L+
Sbjct: 1750 GIKIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSEDVMIKQLS 1796
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 445 DDKCQFGFPRNVVVAA-IAC 501
D CQ GF RN+V+ A +AC
Sbjct: 327 DRLCQLGFDRNIVIQAYLAC 346
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 737 RPRRSPSKGRKTVRSCLLYQ 678
RPRR + RK+VR C++ Q
Sbjct: 85 RPRRDGERKRKSVRGCIVGQ 104
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 737 RPRRSPSKGRKTVRSCLLYQ 678
RPRR + RK+VR C++ Q
Sbjct: 85 RPRRDGERKRKSVRGCIVGQ 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,818
Number of Sequences: 5004
Number of extensions: 64429
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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