Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N13
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    29   0.70 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    27   3.7  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   4.9  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   6.5  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 207 FVN*YSGLSLLVNASPFAFCSPTFNVNIT*INLVFTEINYIYKDMLVHFMISGI-LFILL 31
           F+  Y+GL     ++P+A  S  FNVN   I      +   + D L H  +SG  L ++ 
Sbjct: 356 FIWPYAGLPNTGRSNPYARISEIFNVNHFVITQSRPSLFPTFYDELHHHRVSGYSLKMIR 415

Query: 30  VMSLVVVYEF 1
           ++ L + Y F
Sbjct: 416 LVGLEMAYRF 425


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 32  SNINNIPEIIKCTNISLYI*FISVKTKLIYVILT 133
           SNI ++ ++  C+N ++ I F S +TK I V L+
Sbjct: 487 SNITDVEKVCACSNKNIQISFSSDRTKGILVPLS 520


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 695 QCKNIYGEI**IFVSRISNKGFF*QILVVFNKI 597
           Q +N+YG +   F S +  KG++ +IL   +KI
Sbjct: 465 QQENVYGHVLDGFKSSVDQKGYYLKILTRLSKI 497


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 564 CILYKILKMPKYFVEHY*DLLKKTFIRNPAYKNLLDFTIYIFTLKFSF 707
           C  Y+ LK   YF +HY   LK  +I  PA + L +FT     L+  F
Sbjct: 154 CKSYERLK--SYFRKHYWPTLKANYILWPAVQ-LFNFTFVPLVLQVIF 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,215
Number of Sequences: 5004
Number of extensions: 57173
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)