Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N13
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    28   6.1  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    28   8.0  

>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -3

Query: 162 PFAFCSPTFNVNIT*INLVFTE--INY-IYKDMLVHFMISGILFILLVMSL 19
           P  FC  +F VN   I L+FTE   N+  Y+ +L++F +  +++ ++ +++
Sbjct: 11  PLIFCGLSFLVNPVFIYLIFTEKSTNFGNYRYLLLYFALFNLIYSVVYVAV 61


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -3

Query: 162 PFAFCSPTFNVNIT*INLVFTEINY---IYKDMLVHFMISGILFILL 31
           P  FC+ TF VN   I L+F+E +     Y+ +L++F I  +L+ ++
Sbjct: 11  PRTFCALTFLVNPIFIYLIFSEKSSKFGNYRYLLLYFAIFNLLYSIM 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,196
Number of Sequences: 27780
Number of extensions: 303267
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)