Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N13
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 371 SFNSSHFRVKSK*YDDT*QNISCSNY 448
           +FN  +FR+     DD  +N  C  Y
Sbjct: 397 NFNDVNFRILGANVDDLMRNTRCGRY 422


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  SGILFILLVMSLVVVYEF 1
           S +LFILLV   V VY F
Sbjct: 86  SFLLFILLVQIAVAVYAF 103


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 461 MSNHHNLSKICFV 423
           M+ HHN  K+C V
Sbjct: 125 MTKHHNFIKVCSV 137


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 75  MLVHFMISGILFILLVMSLVVVYE 4
           +LV   +S +   LLVM + ++YE
Sbjct: 79  LLVSLAVSDLCVALLVMPMALLYE 102


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 493 FIIVYFSIKKSMVQHFLL*KIIFNAYCIKY 582
           ++I+YFSI      H+ L     N + +KY
Sbjct: 7   WLILYFSIVCQAKAHYSLRDFKANIFQVKY 36


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 200 FTKIHHIKSQ*LHRCNIYLA*KRFEQYKEIKHAFESEFRKYK 325
           + K+H+ K + L     +    R  + ++  +  E E+RKY+
Sbjct: 252 YEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYR 293


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 317 KYKYFPCAISGK--DILYKLSFNSSHFRVKSK*YDDT*QNISC 439
           +Y+Y   A+S +   ++Y   FN  +FR+     +D  +N  C
Sbjct: 372 EYEYV-LAVSNRIQKVIYGFDFNDVNFRILIANVNDLIKNTRC 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,486
Number of Sequences: 438
Number of extensions: 4004
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)