Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N11
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.70 
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   3.7  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   5.0  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 376 LYSFKNDYLIFRVLSDCLNRSFFFFF 453
           +Y   ND+++  VL+D  +RS F+FF
Sbjct: 329 IYRLYNDFIVNGVLADKESRSIFYFF 354


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 331 GWLIVINKYRHKI*KHCQKKL*RN*K*ISRVSKGTLNL*IYI 206
           GWL++ +KYRH+   H      +N K +   S GT N+ I I
Sbjct: 264 GWLVLYDKYRHEQPLHIVVPE-KNLKSLYLSSPGTFNILISI 304


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -2

Query: 609 ICDFFRQGTYSISAIXHRYTTRIFQSFKT*KL*KQLRFSRLNLTGVW 469
           + DF    T+  S +    + ++++SF    L +++R  R+   G W
Sbjct: 528 LSDFDGSWTFYDSGVLQEISAQVYESFARDVLNQEIRRKRIQKVGYW 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,586
Number of Sequences: 5004
Number of extensions: 36521
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)