Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N08
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.4  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   9.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  FNLXQNLLSLCPNSXQALLNFINK 100
           F + ++L+ L PN  Q+  NF+NK
Sbjct: 781 FKIAESLILLKPNEVQSKNNFLNK 804


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 383 NITLCWCCVHLPIKILRPAPRF 448
           ++T  W C+H  +   RP P+F
Sbjct: 186 SLTTFWVCLHEELAPFRPFPKF 207


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 550 SGLGSEAGAAPFRVSVSLTTEGKQ 621
           SG G+ AG++PF  S +LT E K+
Sbjct: 656 SGFGNTAGSSPF--SFNLTKESKE 677


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 82  TQLYKQIKVS*PAIDAMVPLLLNGILFYADLTNSIPVN 195
           T+L KQ + S  A++  VPL+  G+  Y D    IPV+
Sbjct: 453 TELLKQPQYSPLAVEEQVPLIYCGVKGYLD---KIPVD 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,617
Number of Sequences: 5004
Number of extensions: 48409
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)