Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N08
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical pr...    63   2e-10
AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.      63   2e-10
U04712-3|AAA81903.1|  357|Caenorhabditis elegans unc-87 protein.       30   1.2  
U04712-2|AAA81902.1|  565|Caenorhabditis elegans unc-87 protein.       30   1.2  
U04712-1|AAA81901.1|  374|Caenorhabditis elegans unc-87 protein.       30   1.2  
U04711-2|AAA81900.1|  357|Caenorhabditis elegans unc-87 protein.       30   1.2  
U04711-1|AAA81899.1|  374|Caenorhabditis elegans unc-87 protein.       30   1.2  
AF106590-6|AAT68897.1|  544|Caenorhabditis elegans Uncoordinated...    30   1.2  
AF106590-5|AAC78234.1|  565|Caenorhabditis elegans Uncoordinated...    30   1.2  
AF106590-4|AAK68303.1|  374|Caenorhabditis elegans Uncoordinated...    30   1.2  
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical
           protein F43G9.9 protein.
          Length = 192

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/68 (51%), Positives = 46/68 (67%)
 Frame = -3

Query: 633 VVSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQS 454
           V+  L +L R++ ++   SG  LGPK A   +R+++DE LKAG  VIGLQ GSNKGAT S
Sbjct: 125 VLICLASLARKSEKNFGRSG--LGPKEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATAS 182

Query: 453 GQNLGAGR 430
           G N+G  R
Sbjct: 183 GLNMGNTR 190


>AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.
          Length = 192

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/68 (51%), Positives = 46/68 (67%)
 Frame = -3

Query: 633 VVSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQS 454
           V+  L +L R++ ++   SG  LGPK A   +R+++DE LKAG  VIGLQ GSNKGAT S
Sbjct: 125 VLICLASLARKSEKNFGRSG--LGPKEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATAS 182

Query: 453 GQNLGAGR 430
           G N+G  R
Sbjct: 183 GLNMGNTR 190


>U04712-3|AAA81903.1|  357|Caenorhabditis elegans unc-87 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 93  TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 146

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 147 GFGTGRR 153



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 300 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 333


>U04712-2|AAA81902.1|  565|Caenorhabditis elegans unc-87 protein.
          Length = 565

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 301 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 354

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 355 GFGTGRR 361



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 508 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 541


>U04712-1|AAA81901.1|  374|Caenorhabditis elegans unc-87 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 110 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 163

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 164 GFGTGRR 170



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 317 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 350


>U04711-2|AAA81900.1|  357|Caenorhabditis elegans unc-87 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 93  TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 146

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 147 GFGTGRR 153



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 300 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 333


>U04711-1|AAA81899.1|  374|Caenorhabditis elegans unc-87 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 110 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 163

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 164 GFGTGRR 170



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 317 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 350


>AF106590-6|AAT68897.1|  544|Caenorhabditis elegans Uncoordinated
           protein 87, isoform c protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 280 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 333

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 334 GFGTGRR 340



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 487 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 520


>AF106590-5|AAC78234.1|  565|Caenorhabditis elegans Uncoordinated
           protein 87, isoform a protein.
          Length = 565

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 301 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 354

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 355 GFGTGRR 361



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 508 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 541


>AF106590-4|AAK68303.1|  374|Caenorhabditis elegans Uncoordinated
           protein 87, isoform b protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 624 TLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKGATQSGQ- 448
           T F  GR+  R     G  +   PAD    +  +E ++  + ++ LQAG+NK  +Q G  
Sbjct: 110 TGFGSGRDVCRE----GVRVAQNPADLA--ELPEEKIRMSEGIVRLQAGTNKYDSQKGMT 163

Query: 447 NLGAGRK 427
             G GR+
Sbjct: 164 GFGTGRR 170



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSGQ-NLGAGRKI 424
           E +K  +T+I  QAG NKG +Q    + GA R +
Sbjct: 317 EAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 350


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 522 EVLKAGQTVIGLQAGSNKGATQSG 451
           E LK G T +  QAG+NK  TQ G
Sbjct: 20  EQLKGGNTFLSQQAGTNKFETQKG 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,515
Number of Sequences: 27780
Number of extensions: 274278
Number of successful extensions: 577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)