Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N04
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   170   5e-43
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.0  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   7.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  170 bits (413), Expect = 5e-43
 Identities = 74/96 (77%), Positives = 91/96 (94%)
 Frame = -3

Query: 302 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 123
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 122 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 15
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++E
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIE 112


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 260 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 138
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 329  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 219
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 357
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 365 MAAAVVSGKDIEKPQAEVSPIH 300
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 365 MAAAVVSGKDIEKPQAEVSPIH 300
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 275 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 150
           R+ +S  KVC   L  GAKK++        +  KIL IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,295,287
Number of Sequences: 27780
Number of extensions: 245058
Number of successful extensions: 524
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)