Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N02
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   2.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   3.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   3.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 514 NTEVGLNLMSVLHNPIEPPLNV 579
           NT+  +NL +++ +P EPPL+V
Sbjct: 554 NTQHSINLHTIVPSPYEPPLSV 575


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 715 HXMANTHGFPVP*LSDEDVEI-DVSYQT 635
           H  ANT GFP+P +  + V+I D+ Y T
Sbjct: 457 HLYANTVGFPIPSIEFKLVDIPDLGYYT 484


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 529 LNLMSVLHNPIEPPLNVDMVLSAVFP 606
           + LM+VL +   PP  +D ++ A FP
Sbjct: 289 ITLMNVLASQNVPPAQIDSIMKAAFP 314


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 366 VKDGFITI*KXNCEVVLLRQCFN--LSCSICSVS--FYLYV 256
           +KD F  + +  C ++L  +CF   + C+I   S  F+LY+
Sbjct: 873 IKDVFNVLLEGRCSLILSHRCFQYMVLCAIVQFSGVFFLYL 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,878
Number of Sequences: 5004
Number of extensions: 47441
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)