Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N01
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    28   1.9  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   7.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.9  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 153 ATLQNILLG*HNANRNLFIQKHNNTILIKKTLSNLNGKKN 272
           +T Q IL    N N N+F   HN T+ +  TL+    + N
Sbjct: 431 STNQIILKNQENINNNMFGSIHNTTLSLNSTLNTFMNELN 470


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 126 HVA-DFG*NMATLQNILLG*HNANRNLFIQKHNNT 227
           H+A D    +  L N LL  H+A   + I +HNNT
Sbjct: 118 HLAHDIQLKLDELGNALLNDHSAGPQIVISEHNNT 152


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 201 LFIQKHNNTILIKKTLSNLNG 263
           L ++ HN   L+K T SNL+G
Sbjct: 470 LIVKNHNQLSLLKCTFSNLDG 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,402
Number of Sequences: 5004
Number of extensions: 48617
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)