Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_N01
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    28   7.1  

>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 463 SSYSSTRKLIALERDVTTNLPQINYIEICDKKKE 564
           +S + TR L+ L   VTT+LP +  I  C K ++
Sbjct: 36  ASIARTRMLVPLTAIVTTSLPMVAAIAFCAKNRK 69


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 126 HVADFG*NMATLQNILLG*HNANRNLFIQKHNNTILIKKTLSNLNGKKN*EKFIVTEI 299
           H+ D   N+AT++++      AN  +F +K N   L K  + N+N +    K+I  E+
Sbjct: 529 HITDILRNLATIKSV------ANIEVFHEKENIDFLRKLLIGNINFRVRNGKYIFAEL 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,457
Number of Sequences: 27780
Number of extensions: 270756
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)