Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_M23
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 73 1e-14
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 29 0.34
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.44
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 1.4
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 26 1.8
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 2.4
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 4.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 7.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 9.5
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 73.3 bits (172), Expect = 1e-14
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = -2
Query: 326 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 153
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 152 XXXXXXKIVLRLEC 111
K+VLRLEC
Sbjct: 61 KAKVTKKVVLRLEC 74
Score = 47.6 bits (108), Expect = 7e-07
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = -3
Query: 166 PSSKRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRKG 29
P ++ K +K+ L + K ++Q+ LKRCKHFELGG+KK KG
Sbjct: 56 PVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKG 101
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 28.7 bits (61), Expect = 0.34
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 160 SKRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRKGLDDPIL 11
SK R +P+ + +LS + S V LK C ++ + K + DP++
Sbjct: 318 SKHRDRPIEESLEILSEM--DKGSDVGLKNCIRAKISYENPNKAMRDPVI 365
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.44
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 217 PWAACLSLDFLYCDTLCTLWHL 282
P A + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 1.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 289 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSV 110
K +A K R H+ + + V ++ V SPNP S +R+K R+ S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSSS 299
Query: 109 LIXKVRSQVA 80
+ ++VA
Sbjct: 300 ITTPPTAKVA 309
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 26.2 bits (55), Expect = 1.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 136 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 315
L+VF FF+ G LR R+L S+ F + L TL+H + + + C G
Sbjct: 40 LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92
Query: 316 TFTIFE 333
F +F+
Sbjct: 93 FFNLFK 98
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/65 (24%), Positives = 23/65 (35%)
Frame = +2
Query: 98 LXNQHTQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCG 277
+ NQ D W L W WT + ++Y + + R F VLCG
Sbjct: 1210 ILNQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCG 1266
Query: 278 IYIFC 292
+ C
Sbjct: 1267 TIVSC 1271
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 378 AGRCSLTFVDIVPNELKNGERTKTAQDVL 292
+GRC L F+ ++P E + +T + + L
Sbjct: 133 SGRCVLQFLSVLPEEASDPRKTSLSWEEL 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 253 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 167
ST+ PR T E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 241 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 158
P+K + P+V +M +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 244 SPRKGTLPRVEDVMIVNSRVTVVSPNP 164
SP +G+LPR ++ + +++ NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,419
Number of Sequences: 5004
Number of extensions: 26262
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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