Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M22
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.3  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.2  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   6.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   9.2  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 585 TSHYYLNLNNSDRLSL--IRRLNFKICLLLWFSYNF 484
           TS Y LNL+     SL  +  L FK+C+ LW S ++
Sbjct: 220 TSDYQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQSY 255


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 531 RLNFKICLLLWFSYNFFIFCKNIVWLYYYLLIHFAMP 421
           + +F + LL  F ++FF + ++IVW  Y+ +I   +P
Sbjct: 189 KASFVLWLLRGFGFSFF-YLQSIVWHLYHSMIISLLP 224


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 325 KLNNTLTNIIKPLFYHINYNKYQASSSS*FI 417
           K + T TN++   FYH+  N+Y   + S F+
Sbjct: 375 KSSATKTNLVSHFFYHVVSNQYGLCAFSSFL 405


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 543 SLIRRLNFKICLLLWFSYNFFIFCKNIVW 457
           SL+RR+N+ I +L W   N+ +  +NI+W
Sbjct: 54  SLVRRINYYIPVLHWLP-NYSL--RNIIW 79


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 546  LSLIRRLNFKICLLLWFSY 490
            L  +RRLN+K C+  W  Y
Sbjct: 962  LESLRRLNYKNCISFWKKY 980


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 338 VLFSFSNM-DIRLEEWTYIVQMIIKNAIT*MNYKYLVY 228
           VLF +S++ D         +++++    T  NY+YLVY
Sbjct: 362 VLFKYSDLRDRNANISARSIKLVVSQVFTAANYEYLVY 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,998
Number of Sequences: 5004
Number of extensions: 51488
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)