Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M21
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    27   8.9  

>Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical
           protein F26D2.1 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 196 PFPEIYFIMLVNIYNSVIRE*HWN 267
           PF  I FI++V+ Y +VIR+ +W+
Sbjct: 294 PFDSISFIIIVSEYRNVIRDRYWD 317


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 196 PFPEIYFIMLVNIYNSVIRE*HWNQWLFCQLLERY 300
           PF  I FI++V+ Y  VIR+ +W+ + F +   RY
Sbjct: 298 PFDSISFIIIVSEYREVIRDRYWDTF-FGRAERRY 331


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 110 LTCDSNIYIK---IVKFKTRIEN-NPRAKRLMFLFLKFILLCW 226
           L C SN+  K   IV+F + +EN N R   + FL L  IL  W
Sbjct: 5   LRCSSNLNYKQCAIVRFSSEVENGNRRIILIFFLLLLLILSGW 47


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 196 PFPEIYFIMLVNIYNSVIRE*HWN 267
           PF  I F+M+V  Y ++I E +W+
Sbjct: 297 PFDSISFLMIVTEYRNIIHERYWS 320


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 203 GKGTLISWLLDYFRFSF 153
           GK + +SWL DY +FS+
Sbjct: 617 GKASTLSWLRDYIKFSY 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,265
Number of Sequences: 27780
Number of extensions: 270415
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)