Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M21
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.64 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 432 AGHWIIVQLPLCDNTIQNQFELNIHMYFYLGCRHMT 539
           +G W I+ +P   NT +  F     + FY+  R  T
Sbjct: 198 SGTWDIINVPAYLNTYKGDFPTETDITFYIIIRRKT 233


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 444 IIVQLPLCDNTIQNQFELNIHMYFYLGC 527
           +I+QLP C   + + +  ++   F L C
Sbjct: 22  VIIQLPFCGPNVIDHYFRDLQPLFKLAC 49


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 561 KFLVTTDLSYVCIPSKSTYVCSVQIDSEWYC 469
           K  V  DLSY C   KS  +   Q +   YC
Sbjct: 135 KRTVRKDLSYACREEKSCIIDKRQRNRCQYC 165


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 561 KFLVTTDLSYVCIPSKSTYVCSVQIDSEWYC 469
           K  V  DLSY C   KS  +   Q +   YC
Sbjct: 135 KRTVRKDLSYACREEKSCIIDKRQRNRCQYC 165


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 234 NVHQHNKINFRKRNINLLALGLFSILVLN 148
           NV Q  ++N  +RN  LLAL   +  VLN
Sbjct: 360 NVPQSGRVNNTQRNEYLLALSDRNQNVLN 388


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 219 NKINFRKRNINLLALGLFSILVLNFTILM*IFESQ 115
           N    RKR++  L  G F+I +LN T+L  + +S+
Sbjct: 467 NLTALRKRDV--LKKGNFTIEILNKTVLAVVRQSE 499


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 21  YMNNFNNRYLLTETCHYNKI 80
           Y NN+NN Y      +Y K+
Sbjct: 97  YNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 21  YMNNFNNRYLLTETCHYNKI 80
           Y NN+NN Y      +Y K+
Sbjct: 97  YNNNYNNNYNNNYNNNYKKL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,806
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)