Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M17
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.41 
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   5.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   6.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   8.9  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 5   IXWILFIYNIILSKHFVFNYSLFAYAVINL*LLKYN 112
           I WI  I++ I+    +F  S+  Y  +N  + KYN
Sbjct: 264 IRWIFIIHSAIIDTFLIFVVSIILYRTLNRDINKYN 299


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 435 MLDAHNAPPVTNIIIFTYI*LLVKNSLAMAFQSVGSPFSVGFVXLIFRSSSHPF 596
           M D ++A     I++FT+   L+ +SL M    VGS  S  F+  I   S + F
Sbjct: 321 MSDGYHAVITLCILLFTHSLALLLSSLEMVLAFVGSTGST-FISFILPGSLYYF 373


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 599  GEWMGTAPKDQXNETHRERRPHGLEGHSQ 513
            GEW+GT+P+   N + ++ RP+ L  H Q
Sbjct: 1539 GEWLGTSPQCIFNFSPKD-RPNPLTIHLQ 1566


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +2

Query: 371 MTLLFLTQKQIFGYNTFYWWLHVRRSQCSTCYQYYYFYVYLASSQELIGYGLPVRGVSVL 550
           ++L++LT   +F  +T+ W++ +  +  S  Y +Y     + +   +I   LP R    L
Sbjct: 652 LSLVYLTDLVLFFLDTYLWYMLI-STMFSIAYSFYMGSA-IWTPWRVIFSNLPRRIYFTL 709

Query: 551 CGFRXPDLSEQF 586
             ++  DLS +F
Sbjct: 710 LAYK--DLSTEF 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,589
Number of Sequences: 5004
Number of extensions: 44953
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)