Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M17
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006664-2|AAF39903.1|  346|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical...    28   4.7  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    27   8.2  

>AC006664-2|AAF39903.1|  346|Caenorhabditis elegans Hypothetical
           protein H24O09.2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 34  HTKQAFRFQLFSFCLCCYKFMIIEI*L*LNSYL 132
           HT Q F FQ F+F    YK  ++E+ L +NS L
Sbjct: 199 HTAQEFMFQNFNFFQILYKCSLVEV-LSINSTL 230


>AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical
           protein Y54G2A.32 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 158 YFSNKSIFFKDQEDKKVEEYINYLFSTLLSNYYSTSGLA 274
           Y  NK++ F D     +++YINYL++  +S  Y T   A
Sbjct: 85  YAQNKALTFIDYR-YSLKKYINYLYNQAISTKYLTKAEA 122


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 217 H*LPLFNFTIKLLFYVWTCVFRSYKTKCS*LISVTYYCVKT*LLFDYLLKINDITFFNSK 396
           H +   N    +LF    C + ++    + L S ++YCV   L  D L  +N  +F+NS 
Sbjct: 85  HLIRYSNAPCSILFQSSDCFYDNFLYYQTALFS-SFYCVS--LFLDRLFSLNPRSFYNSH 141

Query: 397 TNFWLQYFLLV 429
                  FL++
Sbjct: 142 QTLGFIVFLIL 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,789
Number of Sequences: 27780
Number of extensions: 241843
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)