Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M17
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.79 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   7.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 182 FKDQEDKKVEEYINYLFSTLLSNY 253
           FKD +DK  EEY  Y    L S++
Sbjct: 398 FKDLQDKYYEEYKMYELGELASSF 421


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 17  LFIYNIILSKHFVFNYSLFAYAVINL 94
           L  YNI+L +H+  N + +    I L
Sbjct: 232 LLSYNILLRRHYSMNSTTYVTLTIVL 257


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 185 KDQEDKKVEEYINYLFSTLLSNYYSTSG 268
           K Q  K    YI++LF  L  N  +T G
Sbjct: 290 KIQTLKLATRYIDFLFQVLHCNMENTEG 317


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 413 NTFYWWLHVRRSQ 451
           N FYW+ ++ RS+
Sbjct: 439 NVFYWFAYLSRSE 451


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 385 KK*CHLFLVGNRKVIKFSHNNMSLKLITNILFC 287
           KK  H+   G RKV+  +   + + ++ N  FC
Sbjct: 63  KKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFC 95


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 410 YNTFYWWLHVRRSQCSTCYQYY 475
           Y + Y   HVR S+ S+C Q Y
Sbjct: 434 YYSAYSLHHVRSSRESSCEQTY 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,410
Number of Sequences: 438
Number of extensions: 3301
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)