Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M16
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.9  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   6.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   6.7  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   8.9  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 154 KVSYI*KCPFCLKCHLLIAAIXRXLMKDTNXTAELETQLRFEDKQCYECFR 2
           K   + K P C +  L I  +   +++  + + E ET +RF    CYE  R
Sbjct: 19  KAKELDKSPLCSEYELFIKELWPSIVESFHNSTEFETAIRF---CCYETAR 66


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 748 PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 629
           P++L C GTVC    R+ ++S S      SR    +H  P
Sbjct: 29  PVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 317 ILNPFRWFEENFIHILLVSYAI 252
           I  P+++FE +F+HI+ VS +I
Sbjct: 255 ISQPWKFFESDFVHIVPVSPSI 276


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 718 CLPWKRHCHNSPSRTGTFLSRSTERSHH 635
           CL W RH  +S SR+G         ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 703 RHCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVNNLF 581
           R CHNS +R+  F+S     +     V+    Y+  +NN+F
Sbjct: 131 RCCHNSFARSDPFISEEVRAATDEDEVYHFIAYT-NINNVF 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,976
Number of Sequences: 5004
Number of extensions: 53830
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)