Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M16
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 115 CHLLIAAIXRXLMKDTNXTAELETQLRFE 29
           C  L+A++      D+N  +++ T+LR+E
Sbjct: 447 CRSLVASVPFFANADSNFVSDVVTKLRYE 475


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 115 CHLLIAAIXRXLMKDTNXTAELETQLRFE 29
           C  L+A++      D+N  +++ T+LR+E
Sbjct: 415 CRSLVASVPFFANADSNFVSDVVTKLRYE 443


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 367 TSNSTSTVKANVTKATLTRRPCPTTQIGIRKNI 465
           +S STS   A+ T ATL    CP+  + ++ +I
Sbjct: 836 SSTSTSPRPASSTAATLVLSGCPSNMMELQVDI 868


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 688 SCGNGASTVSTPSRDSEDL 744
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 694 HNSPSRTGTFLSRSTERSHHSP 629
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = -2

Query: 745 LSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 629
           L +R P    L W     N    T T+    TE   H P
Sbjct: 346 LMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLP 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,990
Number of Sequences: 438
Number of extensions: 3612
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)