Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M14
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   0.97 
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   3.9  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   6.8  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   9.0  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = -2

Query: 298 ERRPQENVPGSERQRLKLDSRVSATLHRRPKPRNDY*SEP*EDTGQDHCQVRP 140
           +R  QE +   ERQ+LKL++  +  + +R  P  ++ ++  ++  +   + RP
Sbjct: 158 QRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVADKTDELNEFEKEFRP 210


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 371 LTFFALIASIMFLVPSDKSEVGARSFLVPRVM 466
           L   A + ++M +VP+    +G RS   P+VM
Sbjct: 4   LKLVASVLALMTIVPAQAGLIGKRSVFKPKVM 35


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 182 TLRRHRAGPLPSATSAHS*WTRFPNPSTTRQS 87
           T+R   A P P  +S+ S W   P+PS+T  S
Sbjct: 193 TIRILSAIPSPLPSSSTSSWADEPSPSSTETS 224


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 328 RKGAADLRQFERRPQENVPGSERQRLKLDSRVSATLHRRPKPRND 194
           R+G    R+   RP+ N+       +  ++  SAT     KP+ D
Sbjct: 229 RRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPKRD 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,914
Number of Sequences: 5004
Number of extensions: 42431
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)