Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M13
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      128   2e-30
08_02_1181 - 24985963-24986242,24987109-24987197                      124   2e-29
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    107   5e-24
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   6.2  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   8.2  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  128 bits (308), Expect = 2e-30
 Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 2/115 (1%)
 Frame = -2

Query: 358 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 179
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 178 LNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASXQGFADK 20
           LNK +WS G+R+VP          RND+ED+  +L++LVT   VP    +G   K
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTK 118


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  124 bits (300), Expect = 2e-29
 Identities = 63/114 (55%), Positives = 79/114 (69%), Gaps = 3/114 (2%)
 Frame = -2

Query: 352 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 176
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 175 NKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASXQGFADK 20
           NK +WS G+R+VP          RND+ED+  +L++LVT   VP    +G   K
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTK 116


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  107 bits (256), Expect = 5e-24
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 18/121 (14%)
 Frame = -2

Query: 328 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 197
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 196 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASXQGFAD 23
           IR+D +LNK +W+ G+R+VP          RND+ED+  +L++LVT   +P    +G   
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132

Query: 22  K 20
           K
Sbjct: 133 K 133


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 301 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 197
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 388 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 293
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,113
Number of Sequences: 37544
Number of extensions: 184603
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)