Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_M11
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 45 5e-05
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 42 7e-04
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 38 0.008
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 30 2.2
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 3.8
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 28 6.6
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 8.7
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/91 (28%), Positives = 45/91 (49%)
Frame = -3
Query: 716 SXYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 537
S Y KVS G + + S + G ++ALD+ ++ A+ NN + Q + R
Sbjct: 338 SYYHKVSKTSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEFR 397
Query: 536 PGVTLTLSAAIDGQNFNAGGHKVGVALELEP 444
P +T+S +D + + KVG++L L+P
Sbjct: 398 PKSLVTISTEVDTKAIDKSS-KVGLSLVLKP 427
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = -3
Query: 680 GVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAID 501
G + + + + G ++ALD ++ A+ NN ++ Q + RP LTLSA +D
Sbjct: 305 GAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVD 364
Query: 500 GQNFNAGGHKVGVALELEP 444
+ + KVG++L L+P
Sbjct: 365 TKAIDKAS-KVGLSLVLKP 382
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -3
Query: 716 SXYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 537
S QKVS+K+ + + D G Y L Q L KI+ ++ +++L
Sbjct: 259 SYVQKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQ-CRLRGKIDTNGVVSALLEERLT 317
Query: 536 PGVTLTLSAAID 501
PGV LSA +D
Sbjct: 318 PGVNFVLSAELD 329
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -3
Query: 725 FGGSXYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQ 546
+GG+ Q V+ L G W + G A+Y + + +I L+ L Y Q
Sbjct: 204 YGGNYIQSVTKNLSLGTEAFWLGQQRKSGVGFVARYDTKKMVAT-GQIATTGLVSLSYVQ 262
Query: 545 KLRPGVTL 522
K+ V+L
Sbjct: 263 KVSEKVSL 270
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -3
Query: 656 GSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGG 477
G+AD+ FG+G L S + +++ S +GL QKL+P V + ++ + F A G
Sbjct: 645 GNADSTFGMG----LTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQANHYAFLALG 700
Query: 476 HKVGV 462
V
Sbjct: 701 SYTSV 705
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 710 YQKVSDKLDCGVSMKWTAGSADTLFGVG 627
+QKV D+LDCG+ + T G + +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 441 ENITKPTLVDKYILLSQPNSVYRESISIVEI 349
E + + T+VDK I LS PNSV + + E+
Sbjct: 141 EGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 523 LHCLLPSMDRTSMQVA 476
LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,168
Number of Sequences: 37544
Number of extensions: 372039
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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