Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M11
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.5  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   7.9  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/95 (32%), Positives = 49/95 (51%)
 Frame = -3

Query: 728 DFGGSXYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQ 549
           DFG S Y KV+  ++ G  + W  G     + +  KYA  +D ++ AK+N+ S + +   
Sbjct: 189 DFGASLYHKVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKVNSSSQVAVAAT 248

Query: 548 QKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 444
             L P + LTLS   +    +A  HK G+ LE +P
Sbjct: 249 HSLSPALKLTLSTQFNLAANDA--HKFGLGLEFDP 281


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -3

Query: 596 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 444
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 40  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -3

Query: 596 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 444
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 38  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 619 TRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPR 440
           T+ ++TR  T  STT+      T+  +A   P     PS    ++  AT   LP+  S R
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAA--PQASTEPSEATEALATATPADLPTKPSGR 295

Query: 439 KYNQTYSCR*IHTVITTK 386
           +       R + +  TTK
Sbjct: 296 EITTITGTRKLSSTSTTK 313


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 728 DFGGSXYQKVSDKLDCGVSMKWTA-GSADTLFGVGAK 621
           DFG +      +++DC VS KWTA GS     G G K
Sbjct: 691 DFGNTEVDDGGERVDCEVS-KWTAWGSCSVSCGRGKK 726


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 408 YILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAF 298
           Y+LL+ P+  YR   SI+   CI P ++ + + F  F
Sbjct: 79  YVLLALPDYHYRYQKSIMSSICIPPPSYASCFLFVHF 115


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -1

Query: 643 HYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLA 464
           HY  +  + + T    CTPR+TT+ ++   T      A P     P+   T+       A
Sbjct: 272 HYETVPPAAQTTPQPPCTPRTTTTTTTTTTTT-----ALPPCVYTPAPPATAPPAT---A 323

Query: 463 LPSNSSPRKYNQT 425
            P+  +PR Y+ T
Sbjct: 324 TPATQTPRTYSTT 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,121,769
Number of Sequences: 27780
Number of extensions: 340979
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)