Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M09
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FP7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q4K0L5 Cluster: Oligosaccharide repeat unit polymerase ...    33   7.5  
UniRef50_Q23GD3 Cluster: Nuclear movement protein; n=3; Alveolat...    33   9.9  

>UniRef50_Q05FP7 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 157

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 18/80 (22%), Positives = 40/80 (50%)
 Frame = +3

Query: 315 FVKQEIFIF*KVHLNYFYXXXXXXXXQLIKYNKFLLVYLVNI*GKIVKICYNISKIVKVR 494
           +  +++F+F  + +N +Y         +   NKF+  Y++N   K +KI + I+   +++
Sbjct: 37  YKNKKLFLFNFIKMNKYYFFYFLANTYIYFNNKFVYNYIINSYNKYIKIIFEINLKNELK 96

Query: 495 KNLITRL*ILEDLYWKNLKY 554
           K  + +  I+     +N KY
Sbjct: 97  KVNLDKKIIIYLSEIRNFKY 116


>UniRef50_Q4K0L5 Cluster: Oligosaccharide repeat unit polymerase
           Wzy; n=1; Streptococcus pneumoniae|Rep: Oligosaccharide
           repeat unit polymerase Wzy - Streptococcus pneumoniae
          Length = 426

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 474 IYYNIFLQSFLRYSLSKQEEIYCILLIVLLFFSFKYK 364
           IY  +F  SF+R+  SK    Y I  ++LLFF+FK K
Sbjct: 387 IYQGVFF-SFIRFPFSKSN--YAIAFVLLLFFAFKKK 420


>UniRef50_Q23GD3 Cluster: Nuclear movement protein; n=3;
            Alveolata|Rep: Nuclear movement protein - Tetrahymena
            thermophila SB210
          Length = 1380

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = -2

Query: 425  NKKKFIVFY*LY----CYFFRSNIKVVKVNFLKYEDFLFHEFNHNSLSDSILEFKF*VSI 258
            N+K FI  + LY     YF + N+K +  NFL+++D+ F         + +L      S+
Sbjct: 991  NQKLFIFDFDLYKNWMVYFPQGNLKAIMENFLRFDDYYFTICKETGGIEGVLH-----SM 1045

Query: 257  FEF-YKKTTYF 228
            F F +++T +F
Sbjct: 1046 FNFLFRRTDFF 1056


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,286,313
Number of Sequences: 1657284
Number of extensions: 10220060
Number of successful extensions: 20385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20380
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)