Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M09
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   2.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.7  

>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -2

Query: 347 FLKYEDFLFHEFNHNSLSDSILEFKF*VSIFEFYKKTTYFCGMLFTILKCNVTFRSFLKM 168
           +L Y       FN  +  D   +F + + ++         C  +FT L    T RS L  
Sbjct: 162 WLSYASIFIPWFNIQNSYDDPNDFNYAIGLY-------LICWFIFTFLVLLCTVRSTLAF 214

Query: 167 FSIVTKFLICQILCA 123
           FS+     +C +L A
Sbjct: 215 FSLFMSLDVCFLLLA 229


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 159 RDEVSDLSNFMCGICLESEERCLIENGP 76
           + ++  + NF CG CL+    C+IE  P
Sbjct: 122 KHKIKCVGNFPCGRCLKKGLECVIETPP 149


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 338 YEDFLFHEFNHNSLSDSILE 279
           +EDF+FHE NH      ILE
Sbjct: 367 HEDFIFHEGNHFRQLKLILE 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,729
Number of Sequences: 5004
Number of extensions: 49274
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)