Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M07
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RTF4 Cluster: Putative uncharacterized protein PY0004...    33   3.5  
UniRef50_Q98PM9 Cluster: MEMBRANE NUCLEASE, LIPOPROTEIN; n=3; ro...    31   8.0  

>UniRef50_Q7RTF4 Cluster: Putative uncharacterized protein PY00040;
            n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY00040 - Plasmodium yoelii yoelii
          Length = 5229

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = -1

Query: 239  KNSVARRRKT-KNKSLMKIVIIQQKLSKKQRRGQNGKIMNVSIWSQ 105
            KNS  ++ +   NKS+ K VI ++K  KK+++ +NG  +NV  +S+
Sbjct: 2694 KNSKFKKNENYSNKSMNKFVIQREKRKKKEKKLKNGDYINVLPFSK 2739


>UniRef50_Q98PM9 Cluster: MEMBRANE NUCLEASE, LIPOPROTEIN; n=3;
           root|Rep: MEMBRANE NUCLEASE, LIPOPROTEIN - Mycoplasma
           pulmonis
          Length = 1125

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 1/121 (0%)
 Frame = -3

Query: 432 NELLSLQSEEAEXXXXXXXXXXRCTSNEGMTVENSVVTASEVIESREIENVTTS-VENIE 256
           N+L S Q +               T NE    ENS     E+  S + ++ T S ++N E
Sbjct: 600 NDLRSEQKQNLTTKNPSSNSSNVETKNETQNNENSSTKKDEIDTSAKTQDSTNSNLKNEE 659

Query: 255 DLESVEXXXXXXXXXXXXXFDENSNHXXXXXXXXXXXXKRKNNECINMESIVVDNERNEF 76
               VE               +  N                N+   N +   +DN++ E 
Sbjct: 660 KTNQVETKTNTESNNSNSTNKQEENSSTKKEEISKSESNVNNSNSTNKQEENIDNKKEEI 719

Query: 75  T 73
           +
Sbjct: 720 S 720


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,705,814
Number of Sequences: 1657284
Number of extensions: 3064091
Number of successful extensions: 6882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6868
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)