Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M06
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   153   2e-38
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   139   5e-34
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   5.3  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.0  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   7.0  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.2  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  153 bits (372), Expect = 2e-38
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
 Frame = -3

Query: 772 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXXNFRTNPNYIKMFELFNETLWRTSMGQ 593
           RG PCWY  P VG   A  D+ ++ S+++     +FR    Y+ + ELF++  ++T +GQ
Sbjct: 105 RGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQ 163

Query: 592 HLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDI 416
            LD +T    + D S F+L +             + LPV+L + LA     +  K AQDI
Sbjct: 164 QLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPENLKCAQDI 223

Query: 415 CLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYG 236
            + +G  FQ+QDD++DC+GD   TGK+GTDI + KC+W+   AL +CT  QR +    YG
Sbjct: 224 LIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQRVILDDNYG 283

Query: 235 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 113
             +    +R+K ++E+L++   +++ E++    I + I+ +
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  139 bits (336), Expect = 5e-34
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 3/242 (1%)
 Frame = -3

Query: 772 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXXNFRTNPNYIKMFELFNETLWRTSMGQ 593
           RG+ CWY    VG+  A  +S L+ + +       FR  P Y+ + + F E  + T +GQ
Sbjct: 110 RGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQ 167

Query: 592 HLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDI 416
             D ++  + +    SF L +             + LP+   LLL+ N ++K Y +   +
Sbjct: 168 QEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKL 227

Query: 415 CLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYG 236
              +G  FQ+QDD++DCFGD    GKVG DIQ+ KCTWL   A +  +  Q  + +A YG
Sbjct: 228 SKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQLNLLRAHYG 287

Query: 235 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RVLFKKLLDITY 62
            +   ++  IK+LY +L +P++Y   E  M D+I ++I+ I       + +F K   + Y
Sbjct: 288 KAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFTKFFQLIY 347

Query: 61  NR 56
            R
Sbjct: 348 KR 349


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 406 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 230
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 229 EPAHVERIKRLYE 191
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 217 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 125
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 424 QDICLEIGTMFQIQDDFIDCFGDE 353
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 456 KMWMKKFINLLKTFAWK*ERCS 391
           K  +K+F NLLKTFA + ER +
Sbjct: 93  KRRIKRFRNLLKTFACRIERAN 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,356
Number of Sequences: 5004
Number of extensions: 63797
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)