Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_M06
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical pr... 134 5e-32
Z92973-1|CAB07493.2| 323|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.7
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.7
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 29 3.7
U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q (ubi... 29 3.7
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 29 3.7
AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine re... 29 3.7
AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical... 29 4.9
Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical p... 28 6.5
Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical p... 28 6.5
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ... 28 6.5
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 8.6
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 8.6
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 8.6
>Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical
protein R06C1.2 protein.
Length = 352
Score = 134 bits (325), Expect = 5e-32
Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 7/228 (3%)
Frame = -3
Query: 772 RGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXXNFRTNPNYIKMFELFNETLWRTSMGQ 593
RG PCW+RR VG++ A D+ ++ S + + + N ++ E + ++ +T +GQ
Sbjct: 109 RGKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRKSKQKTLIGQ 167
Query: 592 HLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 413
LD + N+ SSFT DR P+ + L++++ + + S + +
Sbjct: 168 FLDTSSVNQ---ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL--AYHGSVKKVA 222
Query: 412 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR-------TV 254
+IG +FQ QDDF+D +GD TGK+GTDIQ+ KCTWLAV+ALQ+ +
Sbjct: 223 YQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHKTPEKWGAKLIEE 282
Query: 253 FKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIP 110
FK +GS +P VE+IKR+Y++L L Q ++ EK I + I IP
Sbjct: 283 FKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIP 330
>Z92973-1|CAB07493.2| 323|Caenorhabditis elegans Hypothetical
protein Y6G8.1 protein.
Length = 323
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 2 TVVXKGFV*NILYYCLMLPIVRNIQQLFKENAG-GLYWYIFNLSYNIVVHRFFLMLVYLR 178
TV+ GFV I+ Y +LP I Q+ +E L++ I N +V +FL ++ L
Sbjct: 21 TVILIGFVVLIVVYTTLLPFYLRINQVNRERDNKTLFFSITNHFCFLVKTSYFLFVILLI 80
Query: 179 EVKVFVK 199
+ + +K
Sbjct: 81 DSTLLMK 87
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 384 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 238
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 384 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 238
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 384 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 238
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 187 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 234
>U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 466 LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 320
+LA+ D K+++ A + +G FQ+ DD +D + GK V D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 384 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 238
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 68 protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 47 LMLPIVRNIQQLFKENAGGLYW-YIFNLSYNIVVHRFFLMLVYLREVKVFVKSFYAFHMC 223
L+L I + + FK Y + ++ Y+I + F L ++ + ++F + F
Sbjct: 26 LLLAIFCSKRVTFKSELSLFYTRFAADIGYSISISNFKLYILAVMISEIFAVKNFIFITL 85
Query: 224 WFTATITGFEYCTLCFSTALQRLNCQPSTFALLYICTN 337
W T I G +L F T L R+ S F + C N
Sbjct: 86 WLT-IIFGIIRTSLLFLTTLDRV---ISLFFPFFYCAN 119
>AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical
protein Y48G8AL.15 protein.
Length = 139
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 175 QIY-KHQEKAMYDNIIRQIENIPIEAARV 92
Q+Y +HQ K YD ++R I + P+ A RV
Sbjct: 56 QLYAQHQGKFFYDRLVRHISSGPVIAMRV 84
>Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical
protein C50B6.14b protein.
Length = 420
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 217 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 113
+ER +R+ +DLHL I K DNI++ IE++
Sbjct: 383 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 417
>Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical
protein C50B6.14a protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 217 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 113
+ER +R+ +DLHL I K DNI++ IE++
Sbjct: 362 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 396
>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
protein Y42A5A.1 protein.
Length = 1045
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 56 PIVRNIQQLFKENAGGLYWYIFNLSYNIVVHRFFLMLVYLREVKVFV 196
PI N +L LY +I N ++ + + + + L+Y E+K+FV
Sbjct: 124 PIFTNSTELITTTEDPLYVHINNTNHRLQIPQIHIPLLYEVELKLFV 170
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 658 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 554
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2318 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2352
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 658 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 554
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2902 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2936
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 658 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 554
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2318 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2352
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 658 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 554
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2902 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2936
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 658 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 554
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2902 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2936
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,553
Number of Sequences: 27780
Number of extensions: 359659
Number of successful extensions: 974
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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