Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M05
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    32   0.086
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   1.8  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    27   3.2  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 519 LTYILNMFIHLNASLRYKQTIKHVVYKQEQTNFQFKTNEINKNIISRIHS 370
           L  +  + +HL  SL+YKQ++      Q ++N    T E N N ++R +S
Sbjct: 152 LPNVRELVMHLLQSLKYKQSLVKSRLNQSRSNLPQMTREANDNDVNRRNS 201


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 38  LKSFVTFTIKLS*HVSHTLQKHWRXYLLIGELA 136
           L+S  + T+ L  +++  +   WR YLLIG LA
Sbjct: 687 LRSVYSHTVSLMKYLTSAVISCWRIYLLIGILA 719


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  LQKHWRXYLLIGELACNMMVSKWSSKC 172
           + +HW  +L++G + CNM+    S  C
Sbjct: 228 IAQHWLIWLVLGWVLCNMVAISSSYAC 254


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 632 QIQRFTEAFRVRDTEQNGTVT 570
           QI  F EAF + D +Q+G +T
Sbjct: 10  QIAEFREAFSLFDRDQDGNIT 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,605
Number of Sequences: 5004
Number of extensions: 37457
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)