Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M05
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical ...    48   5e-06
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    31   0.74 
U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical
           protein M04F3.4 protein.
          Length = 172

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = -1

Query: 665 ISVDQFIVMCVQIQRFTEAFRVRDTEQNGTVTIAFEDFLTIALS 534
           I+ D FI +CV +Q  T AFR  DT+++G +T+ +E FLT+  S
Sbjct: 126 INFDDFIQLCVVLQTLTAAFRDVDTDRDGVITVGYEQFLTMVFS 169


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 534 LFYLKLTYILNMFIHLNASLRYKQTIKHVVYKQEQTNFQFKTN-EINKNIISRIHSSKTK 358
           L+ L L  I+N  I   A   Y+Q I   V K  + N+Q + + E NK+ I+  +S  +K
Sbjct: 311 LYLLILNPIINPLITAFAYAPYRQMIYSRVRKSSRKNYQDQNSYETNKSNITSTNSVSSK 370

Query: 357 RFI*SISEPTNIVTTTINK 301
            F   ++      T T+ K
Sbjct: 371 VFYVDLTMAKQNHTKTLRK 389


>U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical
           protein F09C12.6 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -3

Query: 219 DIKTFSYFYTNTIYVGHLLDHLLTIILQASSPINK*XRQCFCNVCDTC*LNFIVKVTKDL 40
           D  TF Y    + Y+   L + +T+I +ASS INK  R+   NV  +  ++FI  V   +
Sbjct: 192 DYATFIYICNISGYLFSFLINCITMI-KASSTINKLVRRQIINVRYSLVISFISFVLVSI 250

Query: 39  SNVX*CISI 13
            N    +S+
Sbjct: 251 PNAISILSV 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,917
Number of Sequences: 27780
Number of extensions: 202017
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)