Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M03
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...   171   3e-43
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...   171   4e-43
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    31   1.1  
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       31   1.1  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       31   1.1  
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas...    29   4.5  
AF106591-5|AAK71394.1|  637|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score =  171 bits (417), Expect = 3e-43
 Identities = 83/137 (60%), Positives = 103/137 (75%)
 Frame = -1

Query: 433 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 254
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 253 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 74
           K P T+E++MKKIED+NTLVFIV   ANKHHIK AV  LY++   KVNTLI P  +KKAY
Sbjct: 68  KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAY 127

Query: 73  VRLARDYDALDVANKIG 23
           VRLA DYDALDVANKIG
Sbjct: 128 VRLASDYDALDVANKIG 144


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score =  171 bits (416), Expect = 4e-43
 Identities = 83/135 (61%), Positives = 103/135 (76%)
 Frame = -1

Query: 427 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 248
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 247 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVR 68
           PLT+E+AMKKIE++NTLVFIV   ANK+ IK AV KLY++   KVNTLI P  +KKAYVR
Sbjct: 71  PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130

Query: 67  LARDYDALDVANKIG 23
           L  DYDALDVANKIG
Sbjct: 131 LTADYDALDVANKIG 145


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 403 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 227
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 226 MKKIEDNNTLVFIVH 182
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 403 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 227
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 226 MKKIEDNNTLVFIVH 182
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 403 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 227
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 226 MKKIEDNNTLVFIVH 182
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 403 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 227
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 226 MKKIEDNNTLVFIVH 182
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 14  YMIANFVGNVQCVIISSESYVRFLLTIRPDESVDFSNIYI 133
           Y + +  G    + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 14  YMIANFVGNVQCVIISSESYVRFLLTIRPDESVDFSNIYI 133
           Y + +  G    + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 14  YMIANFVGNVQCVIISSESYVRFLLTIRPDESVDFSNIYI 133
           Y + +  G    + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 355 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 224
           + FRR  +    RH    R+++P ++      I KFP  SE A+
Sbjct: 1   MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 374  YSLPMFTFYNLPLSLKCFSNRFHYFF 451
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1276

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 301 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 137
           +KSL  +NR  ++ ++ F   S  +++ I  NNT ++   T+  K  +  A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758


>AF106591-5|AAK71394.1|  637|Caenorhabditis elegans Hypothetical
           protein T01A4.1b protein.
          Length = 637

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 301 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 137
           +KSL  +NR  ++ ++ F   S  +++ I  NNT ++   T+  K  +  A+KKL
Sbjct: 79  KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 131


>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
           protein T01A4.1a protein.
          Length = 1217

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 301 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 137
           +KSL  +NR  ++ ++ F   S  +++ I  NNT ++   T+  K  +  A+KKL
Sbjct: 647 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 699


>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
           protein T01A4.1c protein.
          Length = 1276

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 301 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 137
           +KSL  +NR  ++ ++ F   S  +++ I  NNT ++   T+  K  +  A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 349 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 170
           F  P   E  RHP   R+  P+R +      +K  LT  A+  +       V     +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247

Query: 169 KHHIKAAVKKL 137
           + HIK   ++L
Sbjct: 248 QRHIKLFEEEL 258


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 436 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 299
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


>AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical
           protein D1007.4 protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 351 ISADPRRLNLLGTLSTQGSLCLREIAWMPTTSLNSLSRLK 232
           ++ DP   +LL     + S  ++ I W+P+ S+ S+ +LK
Sbjct: 34  MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,880
Number of Sequences: 27780
Number of extensions: 264210
Number of successful extensions: 949
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)