Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_M02
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0221 - 16554910-16555560                                         29   3.1  
06_01_0966 - 7439901-7440034,7440529-7440610,7440634-7440927,744...    29   4.1  
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    29   5.4  
11_06_0184 - 21006659-21009823                                         28   7.1  
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538...    28   9.4  

>02_03_0221 - 16554910-16555560
          Length = 216

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 596 ALLLCLIGCCPCACIPYC-TDSCKDA 522
           AL  CL+G C   C   C TDS +DA
Sbjct: 78  ALTACLVGACALCCFLLCFTDSYRDA 103


>06_01_0966 -
           7439901-7440034,7440529-7440610,7440634-7440927,
           7441081-7441308,7442803-7442963,7444518-7444608
          Length = 329

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 246 LQPTLRQLMTEFIHYTVNKTLFLYVSSNTFRPIC 347
           L+P LR+L T +   +V   LFL ++SN  +  C
Sbjct: 231 LRPVLRRLFTTYFGESVQDVLFLRIASNEGKAQC 264


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 479 NR*IFQLVQLIINCKNNILVLLFNSILSYELSI 381
           NR +F  VQ +  CK N +  L+  IL+Y+L I
Sbjct: 627 NRKLFNEVQELKGCKANSIAHLYADILNYQLLI 659


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 590 LLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQLVQLIIN 441
           LL  + C  CA +  CT+  K A + C N +A  G   + I+ LV + +N
Sbjct: 443 LLTSMSCSDCAVV-LCTNDSKMAKYCCSNDSANDGP--QIIYSLVDIYLN 489


>05_01_0600 +
           5381879-5381995,5382061-5382216,5382521-5382604,
           5382708-5382833,5383801-5383845,5384423-5384554,
           5384682-5384777,5384880-5385041,5385156-5385300,
           5385753-5385825,5386002-5386062,5386419-5386529,
           5386620-5387093,5387173-5387207,5387760-5388318
          Length = 791

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 569 NNLLGKEAKQTGGF*SLARDLLW*RLPHCMKGS 667
           ++L   E  + GG  SL+R +L   +P C+KGS
Sbjct: 171 DSLHDDELSRNGGILSLSRSILKLGVPECLKGS 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,862
Number of Sequences: 37544
Number of extensions: 338174
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)