Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L24
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    30   1.8  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    27   9.6  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     27   9.6  

>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -2

Query: 342 TDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELL---P 172
           T  G+ A +   LKKVD+I+   +Q   E S+P+  P   T+    +  +P   +    P
Sbjct: 116 TTEGLQADN---LKKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRPSPP 171

Query: 171 VAPPMPEAIRRAI 133
             PP  +AI  A+
Sbjct: 172 APPPRVDAIEEAV 184


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 390 RSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVL 277
           R D  ++ DGF    ETD   S + + S  K+ N+DVL
Sbjct: 163 RQDGAIDQDGFRADDETD---SEEGTSSHPKLSNVDVL 197


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 390 RSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVL 277
           R D  ++ DGF    ETD   S + + S  K+ N+DVL
Sbjct: 163 RQDGAIDQDGFRADDETD---SEEGTSSHPKLSNVDVL 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,810
Number of Sequences: 27780
Number of extensions: 270587
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)