Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L23
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   3.9  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   3.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.9  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   5.2  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   6.8  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +3

Query: 12  FTGMFKFLDSGPKHWHNH--QKLSFPYRHHIARRGVSTNRNRLGSS 143
           F G+F F D G  H H H  Q   FP    I     ST  +R  +S
Sbjct: 127 FVGIFLFHDHGHDHPHTHTAQNYDFPEEDDIESVLPSTIVHRCNTS 172


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 451 SVITSGDESGRSSXEKRVRNYVS 519
           S+ +S   + RSS  +++RNY+S
Sbjct: 256 SITSSAKSNSRSSLSQKIRNYIS 278


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 384 VAATPALSSIREDFMLFIMCI*YSMFRRXNRFV 286
           +A+TP +S + ED+++ +    YSMF+   + +
Sbjct: 588 IASTP-MSKLYEDYLVMLFAFHYSMFQVMTKLI 619


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 424 APLRPYRVCRVGER 383
           APL P   CRVGER
Sbjct: 103 APLNPIDACRVGER 116


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  HNHQKLSFPYRHHIARRGVST 119
           +NH +++FPY+ H   + V +
Sbjct: 460 NNHSQITFPYKRHNIHKSVDS 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,125
Number of Sequences: 5004
Number of extensions: 27233
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)