Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L21
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   120   8e-29
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   118   2e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   3.3  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   3.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    24   7.6  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   7.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   7.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   7.6  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   7.6  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  120 bits (288), Expect = 8e-29
 Identities = 53/84 (63%), Positives = 61/84 (72%)
 Frame = -3

Query: 294 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 115
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 114 XXRMRHLKIVRRRFRNGFKEGKPT 43
             RM +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  118 bits (285), Expect = 2e-28
 Identities = 54/91 (59%), Positives = 62/91 (68%)
 Frame = -3

Query: 294 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 115
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 114 XXRMRHLKIVRRRFRNGFKEGKPTPPKKAVA 22
             RM +LK V R F+NGF+ GKP     A A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 86  TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 199
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -3

Query: 258 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 175
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 239 HNVWVLFRRLPKLEVPFVILSLLTIRKSIGRP 334
           H VW+ FR    + + +  L+ L I  S GRP
Sbjct: 655 HCVWLKFRNFDLVFMAYKRLNALLIELSSGRP 686


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 296
           +LI+ CD  +++  CI + S +  + S++    S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 188 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 295
           W+H D     D   H LHN W    R  K +  F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 190 PMWISCSKITILPLVSEG*AQEDYW 116
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 267  KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 175
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 327 PMLFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQ 205
           P   +++K  ++T    +FGK+    H L   CG    H Q
Sbjct: 43  PSSSKVLKYFRITGCLINFGKQPANDHHLWGHCGARLKHTQ 83


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 288 KGTSSFGKRRNKTHTLCRRCGRSS 217
           KGTS     R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,092
Number of Sequences: 5004
Number of extensions: 26370
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)