Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L20
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    29   0.73 
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   3.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.1  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 375 LLRCANRIGGFLCLILSFFV 316
           L +CANR  GF C ++ FF+
Sbjct: 414 LTKCANRRAGFFCAVILFFM 433


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 415 TFTHIHITTRQLVKLFIWLSVKKI 486
           TF H+H+  + L+ L  W  VK++
Sbjct: 164 TFDHLHVGHKVLLTLTAWFGVKEV 187


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = -1

Query: 703  YLDNRDTNHIYGFNFTNLTFVIVLSSYLANVSE----IYESISGKDV 575
            YLD  + N++Y F+F +++   V S ++ ++ +    IY+ + G D+
Sbjct: 1448 YLDGVEMNYLYAFHF-SISNRFVFSLFMPHLKKVEAIIYDKLPGSDM 1493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,709
Number of Sequences: 5004
Number of extensions: 52143
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)