Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L18
         (445 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   1.2  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           24   2.8  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   4.9  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   4.9  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 54   TRCRERVMFSITSWRGGYHGS-SSQL*HNAAGH*ISVVCLCSSGCAS 191
            TR   RV+ +I SW+   HG  S  L    +GH      LC +G  S
Sbjct: 891  TRWAHRVLPNIGSWQSRKHGDVSFHLCQVLSGHGFFRDYLCRNGFTS 937


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 51   WTRCRERVMFSITSWRGGYHG 113
            +TR   R++  I++W+G  HG
Sbjct: 957  YTRWTHRIIRDISAWQGRRHG 977


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 220  STGATNGVNRPP 255
            STG++N  NRPP
Sbjct: 1627 STGSSNSCNRPP 1638


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = -2

Query: 429 ADASKTDSCVEESYSKLP*ST**LLYLRIARREQKLKEHGASSCISGKRGRRCCNIWHWG 250
           A   K  S +EE    L   +     + I+R    + E+G +    G     CC +W W 
Sbjct: 37  AKKMKKSSALEELERALTAQSSHTKCIPISRNASAIGENGVA-LKKGLPHVICCRLWRWP 95

Query: 249 SVDS 238
            ++S
Sbjct: 96  DLNS 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,344
Number of Sequences: 2352
Number of extensions: 8291
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37418568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)