Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L14
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   0.98 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   0.98 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.0  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   3.0  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.2  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   6.9  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 218 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 102
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -3

Query: 255 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 76
           V S+L EL++WK   K +     P+ESN  +  +          ++ DN  P +E+  + 
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291

Query: 75  PRTDS 61
            R ++
Sbjct: 292 SRDNN 296


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = +3

Query: 48  HIFPWSLCVDCDPVFRLWGNNCHGCQHSTQNTHMYICVKLFH 173
           H +PW L    D   R+W      C         Y+    FH
Sbjct: 105 HEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFH 146


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 156 KCTCVYSGWNVDNRDNYYPITEILDRNPRTDSKEICV 46
           KCT  +   N   RD+Y    EI  R  RT  + IC+
Sbjct: 234 KCTLQHPPGNEIYRDDYISFFEIDGRKQRTWCRNICL 270


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 39  LMLHIFPWS---LCVDCDPVFRLWGNNCHGCQHSTQN 140
           L+LH F W    +CV C+  F+ WG   H  +H TQ+
Sbjct: 394 LLLH-FVWKSALICVLCERKFQSWG---HVVKHITQS 426


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 207 LCHQFSTSSVHQVLILQYL 263
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  YTYFLGVCAWIAIQYFGYGVII 111
           Y YF GV AW ++ ++G  V++
Sbjct: 111 YGYFDGVPAWRSVHHYGEDVLL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,802
Number of Sequences: 5004
Number of extensions: 46734
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)