Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L14
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0127 - 977667-978719,978875-979051                               29   3.1  
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    29   4.1  
07_01_0230 - 1679165-1681108                                           28   5.4  
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    28   5.4  
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796...    27   9.4  
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323...    27   9.4  
10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096     27   9.4  
01_03_0207 - 13790801-13792057                                         27   9.4  

>06_01_0127 - 977667-978719,978875-979051
          Length = 409

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 325 CTKAFPFRKFCLAEIRCKMGWRYCN 251
           C +  P+R+ CLA  +C+ G  Y N
Sbjct: 130 CARLGPYRRGCLANSQCQFGITYAN 154


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 210 KALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNY 106
           K + Q + P E+  R LH C C    +  D  D +
Sbjct: 293 KGMRQMYEPFENLARELHMCPCCQRAFTPDEEDEF 327


>07_01_0230 - 1679165-1681108
          Length = 647

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 495 SPVPLIHVFCQYEMQVRSNRRPASN-LHQSPEILL 596
           SP+  ++ F  + ++V   RRP +N  H SP IL+
Sbjct: 506 SPLTDVYAFAIFVLEVTCGRRPINNYTHDSPTILV 540


>01_05_0251 +
           19952882-19955459,19956209-19956245,19956370-19956586,
           19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  VCAWIAIQYFGYGVIIVTVVN 126
           +C W  + +  YGV++V  VN
Sbjct: 901 ICLWYGLPFVSYGVVLVATVN 921


>12_02_0191 +
           15178717-15179045,15179147-15179546,15179624-15179668,
           15180506-15180571,15181829-15181890,15182161-15182326,
           15183384-15183507,15184177-15184283,15184395-15184505
          Length = 469

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 407 GNLMKKKDLMMRKTDPMETNLIQVNRKMYQSISIQ 303
           G+L   KD+ +  +DP + N + + RK ++SI ++
Sbjct: 15  GDLKFFKDITVTTSDPSKKNAVVMGRKTWESIPLK 49


>11_06_0187 -
           21029511-21029857,21031444-21031739,21032270-21032345,
           21032714-21032836,21033200-21033228,21033823-21034328
          Length = 458

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 243 LDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWN 127
           LD ++L  +   +   K   + ++   LHK  CV  GWN
Sbjct: 245 LDSIDLHSLLNHSYYAKSAELRADHLGLHKALCVLMGWN 283


>10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096
          Length = 404

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 144 HMYICVKLFHLIPLG*ISVIMLCHQFSTSSVHQVLILQYLHPILHLISARQNFLNGNA 317
           H+ +    ++L  L  I    LC   ST +V  +L+L   H    L  A  NFL  +A
Sbjct: 275 HLLVAADRYNLERLKLICEEKLCKHISTGTVSNMLLLADQHHCSGLQKACCNFLGSSA 332


>01_03_0207 - 13790801-13792057
          Length = 418

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 462 MMSFYVSFWCCSPVPLIHVFCQYEMQVRSNRRPAS-NLHQSPEILLV 599
           ++ FYV  +C   +PLI V  +Y   +  NRR AS ++   P +LLV
Sbjct: 362 VIMFYVLIYCVCFLPLIGV--EYRPGMSVNRRKASISIQLRPIMLLV 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,928
Number of Sequences: 37544
Number of extensions: 284476
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)