Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L13
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   171   3e-43
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   131   2e-31
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   131   2e-31
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   4.3  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    27   10.0 

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  171 bits (415), Expect = 3e-43
 Identities = 79/141 (56%), Positives = 110/141 (78%)
 Frame = -2

Query: 442 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 263
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 262 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 83
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A+++
Sbjct: 61  RHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 82  RRAKGRLAALGKDKGKYTEET 20
           R+A GR    G  KGK+T+ET
Sbjct: 120 RKAAGRSRVTGILKGKHTDET 140


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  131 bits (317), Expect = 2e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = -2

Query: 442 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 263
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 262 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 134
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  131 bits (317), Expect = 2e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = -2

Query: 442 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 263
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 262 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 134
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 WPFLFESSQCIQQTFYDTPASLC 240
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 WPFLFESSQCIQQTFYDTPASLC 240
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 WPFLFESSQCIQQTFYDTPASLC 240
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 WPFLFESSQCIQQTFYDTPASLC 240
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 7   PWLWQFPRCIYPCLCQVQPVC 69
           PW ++    +YP LC++  +C
Sbjct: 252 PWYYKMSSAMYPALCELAGIC 272


>Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical
           protein F55G7.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -2

Query: 439 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 260
           KFN+ V   RR N K+    P H  +   +  +++++ +     S+P  K      +  H
Sbjct: 94  KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148

Query: 259 YKG 251
           YKG
Sbjct: 149 YKG 151


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
 Frame = -1

Query: 272 CTWTLQRST---------GWQSDAGVS*KVCCIH*EDSKRKGQWCNSICRHSPFKVCD 126
           CTW LQ  T         GW S+     K+C     +  + G+W ++ C  +   VC+
Sbjct: 126 CTWDLQSGTTAVYNNFADGWPSNED---KICNYFMTNGTQAGKWASASCTETMSFVCE 180


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 200 VYNKLFTIHLHHFANLLTFVVSTYNLNFIVFANRHGFYIEFLS*FLRQGRGHQHSPYM*R 379
           V  K   + LH + ++LT + + Y+       NR+G Y+ F+           +S Y  R
Sbjct: 145 VLRKRPLMFLHWYHHILTMIYAWYSHPLTPGFNRYGIYLNFVV------HAFMYSYYFLR 198

Query: 380 STEMPLPVF 406
           S ++ +P F
Sbjct: 199 SMKIRVPGF 207


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 200 VYNKLFTIHLHHFANLLTFVVSTYNLNFIVFANRHGFYIEFLS*FLRQGRGHQHSPYM*R 379
           V  K   + LH + ++LT + + Y+       NR+G Y+ F+           +S Y  R
Sbjct: 145 VLRKRPLMFLHWYHHILTMIYAWYSHPLTPGFNRYGIYLNFVV------HAFMYSYYFLR 198

Query: 380 STEMPLPVF 406
           S ++ +P F
Sbjct: 199 SMKIRVPGF 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,841
Number of Sequences: 27780
Number of extensions: 241543
Number of successful extensions: 738
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)