Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_L12
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 76 9e-18
06_01_0841 - 6379999-6380040,6380641-6380760,6380863-6380964,638... 72 2e-16
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 33 0.30
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 33 0.30
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 30 1.6
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 30 1.6
02_04_0295 + 21682029-21683534 28 6.4
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 28 8.4
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 76.2 bits (179), Expect(2) = 9e-18
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = -2
Query: 574 PMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNL 395
P ESL++ ER + Y+ + IVPQ+ GK ++IAAHGNSLR I+ HLD L+ ++ L L
Sbjct: 225 PNGESLEMCAERAVAYFKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLEL 284
Query: 394 PTGIPFVYELDE 359
TGIP +Y E
Sbjct: 285 STGIPMLYIFKE 296
Score = 31.9 bits (69), Expect(2) = 9e-18
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 709 YGEAQVQIWRRSXDVPPP 656
+G+ QV WRRS D+PPP
Sbjct: 208 FGKEQVHEWRRSYDIPPP 225
>06_01_0841 -
6379999-6380040,6380641-6380760,6380863-6380964,
6381146-6381302,6381480-6381511
Length = 150
Score = 72.1 bits (169), Expect(2) = 2e-16
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = -2
Query: 574 PMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNL 395
P ESL++ ER + Y+ +VPQ+ GK ++IAAHGNSLR I+ LD L+ ++ L L
Sbjct: 44 PNGESLEMCAERAVAYFKEHVVPQLTAGKHVMIAAHGNSLRSIIMQLDKLTSQEVISLEL 103
Query: 394 PTGIPFVYELDE 359
TGIP +Y E
Sbjct: 104 STGIPMLYIFKE 115
Score = 31.5 bits (68), Expect(2) = 2e-16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 709 YGEAQVQIWRRSXDVPPP 656
+G QV WRRS D+PPP
Sbjct: 27 FGNEQVHKWRRSYDIPPP 44
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 604 YAADPKPEEFPMY-ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDD 428
++++ + +E P ESL ER + Y N + +G+++I+ +HG S+ + +H D
Sbjct: 151 FSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKH--KGERVIVVSHGASIEELCRHADP 208
Query: 427 LS 422
S
Sbjct: 209 TS 210
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 604 YAADPKPEEFPMY-ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDD 428
++++ + +E P ESL ER + Y N + +G+++I+ +HG S+ + +H D
Sbjct: 125 FSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKH--KGERVIVVSHGASIEELCRHADP 182
Query: 427 LS 422
S
Sbjct: 183 TS 184
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 595 DPKPEEFPMY-ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLD 431
D + EFP ESL E+ + Y N V I G+++I+ HG ++ + +H D
Sbjct: 693 DGRNHEFPDGGESLNQLSEQGISYLNKVAQNHI--GERVIVVGHGAAILELCRHTD 746
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 565 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLD 431
ESL ER + Y N V I G+++I+ HG ++ + +H D
Sbjct: 152 ESLNQLSERCISYLNKVAQNHI--GERVIVVGHGAAILELCRHTD 194
>02_04_0295 + 21682029-21683534
Length = 501
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 534 RVLSIVSFRLSYIGNSSGFGSAAYLGSLTMVS*YG*SXXMAGGGTSK 674
+V IV++ S G FG A Y G L +VS S MAG G+ +
Sbjct: 160 KVRDIVAYFRSRAGEEVVFGEAIYSGVLNLVSSSFFSVNMAGVGSEE 206
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 517 VIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNLPTGIPFVYELDENLKPVDS 338
VI + G++I++AA S + +L DLS + + L + ++E LK
Sbjct: 309 VIQDVLNNGEQIVLAAEFKS--SLNTYLSDLSYSPVRSLADIIAFNNAHPIEERLKNFGQ 366
Query: 337 MVFLGDEET 311
++FL E T
Sbjct: 367 LIFLVAENT 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,641
Number of Sequences: 37544
Number of extensions: 347187
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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