Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L11
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    28   1.1  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   2.6  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   2.6  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   6.0  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   8.0  

>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 629 SSLIVPQLWGPAPSLLST 682
           SSL+VP +WG  P++L T
Sbjct: 129 SSLVVPPVWGKMPAILQT 146


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
 Frame = +3

Query: 315  SRPDRIPRQFPHHHHGHLPS--CVPTEPGFSTGSSLHPH---LPSSN--CTAERCVARCV 473
            S+  RIP   P+  +G      CV T P     S+L PH   L +SN    AE       
Sbjct: 849  SKSGRIPTGSPYIMNGQWRKDLCVSTPPMVDINSALFPHWFKLSASNLFAGAEHAGLNRQ 908

Query: 474  KPCIHRVSTHAVLPQRALHVQFQALVHRQRRLQEP 578
            KP    +  +  LP+ +  V  +  V R  R + P
Sbjct: 909  KPDKIDLDLYEPLPENSYLVAAELRVLRALRHKNP 943


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 693 GVKSVDKREGAGPHNWGTIKDDLDELNKXXXXXXXXXEKAPEAGAG 556
           G +++ +RE A     G + D+L E +K           AP++ AG
Sbjct: 56  GPRAMKRREKAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAG 101


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 478 LVFIECQLT---RFFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVEIVLDRAP 648
           L F+ C +    RF L      +F+ L I+   F  LLF  F L  GFV +   +  +A 
Sbjct: 167 LTFLTCVVIAYLRFALRTMSFSNFKELVISLTYFWGLLFVIFLLGNGFVYVPVSMWKKAF 226

Query: 649 VVGTCAL 669
           +    AL
Sbjct: 227 ITKRAAL 233


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 369  PSCVPTEPGFSTGSSLHPHLPSSNCTA 449
            PS  P+ PG+ST  +  P  PS + T+
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTS 1582


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 402 TGSSLHPHLPSSNCT-AERCVARC-VKPCIHRVSTHAVLPQ 518
           TG   H  L + N T  ER +    VKP +H++  H  LPQ
Sbjct: 158 TGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHPFLPQ 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,183
Number of Sequences: 5004
Number of extensions: 34074
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)