Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_L11
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0779 - 20497718-20498773 35 0.072
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 32 0.39
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937... 31 0.67
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524... 31 0.67
10_08_0271 - 16382655-16384451 30 1.6
04_04_0347 + 24564589-24565296 30 1.6
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 30 1.6
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 30 2.1
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 30 2.1
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 2.7
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606... 29 3.6
10_08_0270 + 16378878-16380566 29 3.6
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 29 3.6
12_01_0630 - 5203802-5204111,5204896-5204900 29 4.8
04_03_1022 - 21778315-21779007 29 4.8
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 4.8
12_02_0373 + 18245137-18245360,18245579-18245684 28 6.3
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 28 6.3
01_06_1290 - 36023353-36024096 28 8.3
>10_08_0779 - 20497718-20498773
Length = 351
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 363 HLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHRVS 497
HL +P+ P +S HPH SS+ ++ + CV P +HRVS
Sbjct: 49 HLSPYLPSLPHLLLAASFHPHPISSSSSSSAASSSCV-PLLHRVS 92
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 318 RPDRIPRQFPHHHHGHLPSCVPTEP 392
+P + P HHHH H PS P+ P
Sbjct: 8 QPPQTPPSLDHHHHHHTPSVGPSSP 32
>05_03_0423 +
13792424-13792564,13792712-13792944,13793681-13793756,
13794003-13794089,13794500-13794553,13794654-13794695,
13794818-13794896,13795059-13795129,13795235-13795297
Length = 281
Score = 31.5 bits (68), Expect = 0.67
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +1
Query: 316 VGQIVFL-VSFLIITTVT--FLLAFQQNQVFPLAQVFTLTCLPQIVLRSGALRVA*SLVF 486
+ Q+ +L SF+I++ + + + + P Q CL I S V +VF
Sbjct: 177 LSQVPYLGASFVIVSILVNPSIRSIVSKRAGPFEQGMVQGCLTGI---SSTANVISPIVF 233
Query: 487 IECQLTRFFLSGHCTFSFRHLSIASAGFRSLL 582
LT +FLS F+FR S+A AGF L+
Sbjct: 234 --SPLTAWFLSETAPFNFRGFSLACAGFAMLI 263
>04_04_0254 -
23951495-23951902,23952000-23952155,23952344-23952485,
23952772-23953160,23953833-23953948,23954290-23954371
Length = 430
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 336 RQFPHHHHGHLPSCVPTEPGFSTGSSL 416
R P HHHGHL S T GFS+ SL
Sbjct: 312 RHIPEHHHGHLKSVKIT--GFSSAKSL 336
>10_08_0271 - 16382655-16384451
Length = 598
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 508 FFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVEIVLDRAP-VVGTCALPLVD* 684
FF +G T+ FR L+ AG+ S LFS ++ + +V++ +P + A+P
Sbjct: 301 FFTAGRTTWDFRRLNDGDAGWGSKLFSLPAIK----NMTALVVEASPWHLNDAAIPFPTA 356
Query: 685 FH 690
FH
Sbjct: 357 FH 358
>04_04_0347 + 24564589-24565296
Length = 235
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Frame = +3
Query: 300 PRAVDSRPDRIPRQFPHHHHG--HLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCV 473
P R D+ HHHHG H T P + S H P+ ++ A
Sbjct: 80 PAPAPVRDDKPSPSHHHHHHGHHHHRHATATAPAHAPSSHHDRHAPAPVHSSWPWPAHAP 139
Query: 474 KPC---IHRVSTH-AVLPQRALHVQF 539
P IH ++H A P + HVQ+
Sbjct: 140 APAPAVIHGTNSHLAPAPAPSSHVQY 165
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 675 KREGAGPHNWGTIKDD 628
KREGAG NWGT+ D+
Sbjct: 173 KREGAGRGNWGTVTDE 188
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 339 QFPHHHHGHLPSCVPTEP 392
Q HH HGHLP+ P +P
Sbjct: 190 QHQHHGHGHLPASFPDQP 207
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 29.9 bits (64), Expect = 2.1
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Frame = +3
Query: 348 HHHHGHLPSCVPTEPGFSTGSSLHP-HLPS--SNCTAERCVARCVKPCIHRVSTHAVLPQ 518
HHHH C P P G HP P+ +N + R AR R S + +
Sbjct: 298 HHHHASDAPCKPHHPHHGNGD--HPLFFPNYMANTESSRAKARSQSAPRQRASVSSSASE 355
Query: 519 RALHVQFQALVHRQRRLQEPSLQ*FHPQNRFCSTRRDRP*SCPSCGDLRPPSC 677
A V+++ +RR + P N+ + R CPS P SC
Sbjct: 356 -ASSVRWERQASARRRASLEAQAASAPPNKCGAAMMARVQRCPSQAS-APASC 406
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 369 PSCVPTEP--GFSTGSSLHPHLPSSNCTAERCVARCVKPCIHRVSTHAVLPQRALHVQFQ 542
P C+ T G S +S L S +AR + P IH +S LP++A + Q
Sbjct: 56 PDCIETTTAHGESLSASKEYSLAESQFNRALSIARPLDPAIHNISYGVSLPEKA--SKSQ 113
Query: 543 ALVHRQRRLQ 572
+ + RLQ
Sbjct: 114 RITAARERLQ 123
>11_01_0732 +
6065852-6066531,6067066-6067141,6067231-6067357,
6068084-6068289
Length = 362
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 288 ASGDPRAVDSRPDRIPRQFPHHHHGH 365
A+ P A D P P+ PHH HGH
Sbjct: 23 AAAGPYAGDHGPIARPQGAPHHRHGH 48
>10_08_0270 + 16378878-16380566
Length = 562
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 508 FFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVEIVLDRAP-VVGTCALPLVD* 684
FF +G T+ FR L+ AG+ S LFS ++ + +V++ +P + A+P
Sbjct: 265 FFTAGLITWDFRRLADGDAGWGSKLFSLPAIK----NMTALVVEASPWHLNDAAIPFPTA 320
Query: 685 FH 690
FH
Sbjct: 321 FH 322
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 675 KREGAGPHNWGTIKDD 628
KREG+G NWGT+ D+
Sbjct: 178 KREGSGRGNWGTVTDE 193
>12_01_0630 - 5203802-5204111,5204896-5204900
Length = 104
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 654 GDLRPPSCRLISHRF 698
G LRPPSCR IS R+
Sbjct: 12 GTLRPPSCRAISRRY 26
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 330 IPRQFPHHHHGHLPSCVP-TEPGFSTGSSLHPHLP 431
IP PHHHH P+ P T PG G + P+ P
Sbjct: 85 IPPHHPHHHHPPTPAPAPSTTPGGHGG--VPPYYP 117
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 351 HHHGHLPSCVPTEPGFSTGSSLHP--HLPS 434
HHH PS P EP + S HP H PS
Sbjct: 187 HHHAKPPSLPPAEPPVPSPSPEHPPRHSPS 216
>12_02_0373 + 18245137-18245360,18245579-18245684
Length = 109
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 605 PVLFNSSRSSLIVPQLWGPAPSLL 676
PV+ + ++ ++P+LWGP PSLL
Sbjct: 39 PVVMENDGAA-VLPRLWGPPPSLL 61
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 675 KREGAGPHNWGTIKDDL 625
KREG+G NWGT D++
Sbjct: 188 KREGSGRGNWGTTTDEI 204
>01_06_1290 - 36023353-36024096
Length = 247
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +3
Query: 348 HHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPC 482
HH + V GF+ G S+ PH NC C + C
Sbjct: 121 HHGNDQTSYGVSVVDGFNVGLSVTPHEGRGNCPVLACRKNLTETC 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,219
Number of Sequences: 37544
Number of extensions: 253769
Number of successful extensions: 1034
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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