Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_L11
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 46 3e-05
U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine rece... 34 0.086
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical... 31 1.1
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 30 1.9
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 30 1.9
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 28 7.5
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 7.5
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 28 7.5
AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical... 28 7.5
AF036689-1|AAB88320.1| 186|Caenorhabditis elegans Hypothetical ... 28 7.5
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 27 9.9
AC006776-7|AAF60623.1| 361|Caenorhabditis elegans Serpentine re... 27 9.9
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/95 (33%), Positives = 45/95 (47%)
Frame = -1
Query: 702 DKTGVKSVDKREGAGPHNWGTIKDDLDELNKXXXXXXXXXEKAPEAGAGDGQXXXXXXXX 523
D+TGV+S DK++G G NWG KD+L + + PE +
Sbjct: 187 DRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTE-PEV-PREKTAEELAYEA 244
Query: 522 XXXXXXXELTLDEYKALRNAQRTAPQYNLRKAGEG 418
+ TL E+KA A+ AP++N RKAGEG
Sbjct: 245 ELAVLAKQKTLKEFKAA--AKADAPKFNTRKAGEG 277
>U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein213 protein.
Length = 330
Score = 34.3 bits (75), Expect = 0.086
Identities = 25/76 (32%), Positives = 36/76 (47%)
Frame = +1
Query: 289 LLATHALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFPLAQVFTLTCLPQIVLRSGALRV 468
L+ T W V + + ++ I+ TV F A+Q LA+ F ++ P I L A
Sbjct: 126 LIPTSKCWRVFRTPWFITHFIVATVFFFPAYQMIPDQQLAKNFVISIAPCIPLYVNA--- 182
Query: 469 A*SLVFIECQLTRFFL 516
LVF+ TRFFL
Sbjct: 183 --DLVFVMLLETRFFL 196
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 CVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHR-VSTHAVLPQR 521
CV +P FS ++ PS++ ++ +C+ +C C + + T+ + Q+
Sbjct: 494 CVAAQPNFSVQINMIDETPSTSTSSPQCIPQCQPSCDQQCIQTYKIQVQQ 543
>AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical
protein Y39G10AR.7 protein.
Length = 474
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +3
Query: 276 CPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHP 422
CP +S P +I F H H PSC+PT G L P
Sbjct: 91 CPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRGSPNSPRLTP 139
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 414 LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 506
L+P P NC + R V C KP ++ S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 414 LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 506
L+P P NC + R V C KP ++ S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 294 GDPRAVDSRPDRIPRQFPHHHHGHLP 371
G P + +S P R+P HHHH H P
Sbjct: 233 GPPSSYNSMPTRMP----HHHHHHHP 254
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +3
Query: 318 RPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAER-CVARCVKPCIHRV 494
RP P P ++ +P +PT G G+ +PS A+ C C PC ++
Sbjct: 99 RPSFYPSYVPQYYQPMMPQPMPTAGGCGGGAV----VPSVRIPAQNDCCCGCSSPCKYKS 154
Query: 495 STHAVLPQRAL 527
A + +
Sbjct: 155 VRRAAFAAKTI 165
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 339 QFPHHHHGHLPSCVPTEPGFSTGS 410
Q HHHH +P+ P EP S+G+
Sbjct: 214 QQQHHHHQQIPTSAP-EPSVSSGT 236
>AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical
protein Y46G5A.26a protein.
Length = 515
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 304 ALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFP 402
+LW+ + F II T+TFLL F N+V P
Sbjct: 307 SLWMENETSFQDMISIILTITFLL-FSYNEVMP 338
>AF036689-1|AAB88320.1| 186|Caenorhabditis elegans Hypothetical
protein C50A2.3 protein.
Length = 186
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 315 SRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNC 443
+RP + RQF + HH P+ P + LPSS C
Sbjct: 119 ARPMSMNRQFQNQHHLSTPTVQPLNIQYLYPPRYEATLPSSEC 161
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 279 PTNASGDPRAVDSRPDRIPRQ-FPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAER 455
P N D ++V S + HHHHGH G S G H H +++ ++
Sbjct: 26 PANIEEDTQSVSSSDSGVSADSIDHHHHGH-------GHGHSHGGHGHSHTHNNDDSSSD 78
Query: 456 C 458
C
Sbjct: 79 C 79
>AC006776-7|AAF60623.1| 361|Caenorhabditis elegans Serpentine
receptor, class w protein100 protein.
Length = 361
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 310 WIVGQIVFLVSFLIITTVTFLLAFQQNQVFPLAQV 414
W++ I+F +S L+ F +N+ FPL QV
Sbjct: 146 WLMAVILFFLSALLSVFYQFRFVVIENRSFPLPQV 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,369
Number of Sequences: 27780
Number of extensions: 206902
Number of successful extensions: 816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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