Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L11
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 345 PHHHHGH 365
           PHHHH H
Sbjct: 430 PHHHHSH 436



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 279 PTNASGDPRAVDSRPDRIPRQFPHHHHGHLP 371
           P +    P A  S P  I      HHH H P
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 477  PCIHRVSTHAVLPQRALHVQFQALV 551
            PC+ R ST A +   A+H   + L+
Sbjct: 1105 PCVLRASTPAPVVLEAVHASRRVLI 1129


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 345 PHHHHGH 365
           PHHHH H
Sbjct: 350 PHHHHHH 356


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 529 TFSFRHLSIASAGFRSLLFSSFT 597
           +FS R L +  AGF  ++ +S+T
Sbjct: 633 SFSARVLGMVWAGFAMIIVASYT 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,696
Number of Sequences: 438
Number of extensions: 2318
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)